Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component (from data) from Shewanella loihica PV-4

 Score = 79.7 bits (195), Expect = 3e-19
 Identities = 76/304 (25%), Positives = 135/304 (44%), Gaps = 30/304 (9%)

Query: 197 FILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGLMGSVSGSSVANTVSTGVI 256
           FIL  AFL   GV   I+D +  + G + GG    +V+A  L  +VSGSS A   + G I
Sbjct: 63  FILSSAFLSTGGVARRIIDFAMDSVGHIRGGLAMASVMACMLFAAVSGSSPATVAAIGSI 122

Query: 257 TIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIMASYTQIPYVDIVAVSFIPAL 316
            I  M +AG+P +FAAGV   + T G L+PP       + A+ T++    +     IP L
Sbjct: 123 VIVGMVRAGYPEKFAAGVITTSGTLGILIPP--SIVMLVYAAATEVSAARMFMAGLIPGL 180

Query: 317 IYFLSVAFFVRIEAKRMGVQIVTTSQEP-FMKVLLSGWHNLIPLAVLVTLL--VVG--FT 371
           +  L +   + I A+   ++ + +   P F  + +S    +  LA++V +L  + G   +
Sbjct: 181 MMGLLLMLAIYIVAR---IKKLPSRPFPGFRPLAISSAKAMGGLALIVIVLGSIYGGIAS 237

Query: 372 PTYAAGLSILSVIVASWFSKNHKMGPKAIIEALEQGAKNMATTAVLLVGIGLVINVISTT 431
           PT AA ++ +     + F     +GP   +   + G         +L  +G ++  +  T
Sbjct: 238 PTEAAAVACVYAYFIAVFG-YRDIGPLKNVSWRDSGE---PLIRAILRNLGFMVLAVFKT 293

Query: 432 GIGNTFSLMINNWANGDLLTMLVLIT----------------LASLVLGMGLPVTAAYIV 475
                   ++ + A   ++ + ++                  +A  ++GMGLPV    I+
Sbjct: 294 PADKEIRHVVRDGAKVSIMLLFIIANAMLFAHVLTTERIPHLIAETIVGMGLPVWGFLII 353

Query: 476 LGTL 479
           +  L
Sbjct: 354 VNLL 357