Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 428 a.a., TRAP transporter large permease from Pantoea sp. MT58

 Score = 79.0 bits (193), Expect = 5e-19
 Identities = 73/304 (24%), Positives = 136/304 (44%), Gaps = 26/304 (8%)

Query: 197 FILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGLMGSVSGSSVANTVSTGVI 256
           FIL GA +   G+   +++ +    G + GG   + ++AS   G++SGSSVA+T S G +
Sbjct: 61  FILAGAIMAEGGIARRLVNFAYIFVGFIRGGLSLVNIVASTFFGAISGSSVADTASIGSV 120

Query: 257 TIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIMASYTQIPYVDIVAVSFIPAL 316
            IP M++ G+P  FAA V A+ S    L PP   +  + +A+   +    +     +P L
Sbjct: 121 MIPQMEEKGYPRDFAAAVTASGSVQAVLTPPSHNSVIYSLATGGMVTISSLFVAGILPGL 180

Query: 317 I----YFLSVAFFVRIEAKRMGVQIVTTSQEPF---MKVLLSGWHNLIPLAVLVTLLVVG 369
           +      +    F R      G +I      PF   +K+    +  L  + +++  ++ G
Sbjct: 181 MLGGCLMVMCLGFARKRGYPKGERI------PFRQALKIFFDAFWGLFTVVIIMGGILSG 234

Query: 370 -FTPTYAAGLS-ILSVIVASWFSKNHKMGPKAIIEALEQGAKNMATTAVLL---VGIGLV 424
            FT + +A ++ I +  V  +  ++ K     I+  L +  K +    VL+    G G V
Sbjct: 235 IFTASESAAIACIWAFFVTMFIYRDFKWNQLHIL--LFRTIKTVTIVMVLIAFAAGFGAV 292

Query: 425 INVIS-TTGIGNTFSLMINNWANGDLLTMLVLITLASLVLGMGLPVTAAYIVLGTLSAPA 483
           +  +   T I   F+ + +N        +L+ I +  LV+G  + +    ++L  +  P 
Sbjct: 293 MTFMQLPTMITEAFTSLSDN-----KYVILMCINILLLVVGTLMDMAPLILILTPVLLPV 347

Query: 484 LYKL 487
              L
Sbjct: 348 ATSL 351



 Score = 25.8 bits (55), Expect = 0.005
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)

Query: 356 LIPLAVLVTLLVVGFTPTYAAGLSILSVIVASWF 389
           LI +  L+ LL+VGF   +A G   LS  + +W+
Sbjct: 4   LILIGSLLVLLLVGFPVAFAVG---LSAFIGAWW 34