Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., C4-dicarboxylate transport protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 76.3 bits (186), Expect = 3e-18
 Identities = 73/303 (24%), Positives = 132/303 (43%), Gaps = 28/303 (9%)

Query: 197 FILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGLMGSVSGSSVANTVSTGVI 256
           FIL  AFL   GV   I+D +    G + GG    +V+A  L  +VSGSS A   + G I
Sbjct: 63  FILSSAFLSTGGVARRIIDFAMDCVGHIRGGLAMASVMACMLFAAVSGSSPATVAAIGSI 122

Query: 257 TIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIMASYTQIPYVDIVAVSFIPAL 316
            I  M KAG+P +FA+GV   + T G L+PP       + A+ T++    I     +P L
Sbjct: 123 VIVGMVKAGYPEKFASGVITTSGTLGILIPP--SIVMLVYAAATEVSVAKIFMAGLVPGL 180

Query: 317 IYFLSVAFFVRIEAKRMGVQIVTTSQEPFMKVLLSGWHNLIPLAVLVTLL--VVG--FTP 372
           +    +   + I A+   +  +      F K+ +S    +  LA++  +L  + G   +P
Sbjct: 181 LLGFLIMVVIYIVARIKNLPSIPF--PGFKKLGVSSAKAIGGLALIFIVLGSIYGGVASP 238

Query: 373 TYAAGLSILSVIVASWFSKNHKMGPKAIIEALEQGAKNMATTAVLLVGIGLVINVISTTG 432
           T A+ ++ +     + F     +GP   ++ +     N A  + +   +G ++  +  T 
Sbjct: 239 TEASAVACVYAYFIAVFG-YRDIGP---LKNVAWRNPNEAIPSAIARNLGHMVLGLIKTP 294

Query: 433 IGNTFSLMINNWANGDLLTMLVLIT----------------LASLVLGMGLPVTAAYIVL 476
           I      ++ + A   ++ + ++                  +A  ++GMGLP     I++
Sbjct: 295 IDKEIRHVVRDGAKVSIMLLFIIANAMLFAHVLTTERIPHIIAEYIVGMGLPAWGFLIIV 354

Query: 477 GTL 479
             L
Sbjct: 355 NLL 357