Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 677 a.a., hypothetical transporter (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  261 bits (666), Expect = 1e-73
 Identities = 160/485 (32%), Positives = 254/485 (52%), Gaps = 53/485 (10%)

Query: 52  ISAIHFAGFAMICALWYPALPRWRGSKVALAFDVLLALLALACLIYLMLAEDALYERGVK 111
           + A H     ++  L YPA+ + R  +  LA+  LL L  +A   Y  + E  L +R  +
Sbjct: 44  LRATHVGFLLLVVFLSYPAVGKSRPWQ-PLAW--LLGLAGMATAAYQWIFEADLIQRSGE 100

Query: 112 FVTSDWVFSILAILIVMEMIRRTMGWFIPTLILICLTYVSVWGKWAGGIFHFPGLSAETL 171
              +D V  I+ I++V E  RR MGW +P +  I L Y  ++G++  G     G   + +
Sbjct: 101 LTDADMVMGIILIVLVFEAARRVMGWALPIICCIFLAY-GLFGQYLPGDLMHRGYGVDQI 159

Query: 172 LYRSFYSSEGMFGSIAAISWSFVFMFILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFI 231
           + +  + +EG++G+   +S +++F+FILFGAFL ++G+     D +    G  +GGP  +
Sbjct: 160 INQLSFGTEGLYGTPTYVSATYIFLFILFGAFLEQAGMIRLFTDFAMGLFGHKLGGPAKV 219

Query: 232 AVLASGLMGSVSGSSVANTVSTGVITIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGA 291
           AV++S LMG+++GS VAN V+TG  TIP+MK+ G+   FA GVEA +S G Q+MPP+MGA
Sbjct: 220 AVVSSALMGTITGSGVANVVTTGQFTIPLMKRFGYRPAFAGGVEATSSMGSQIMPPIMGA 279

Query: 292 GAFIMASYTQIPYVDIVAVSFIPALIYFLSVAFFVRIEAKRMGVQIVTTSQEPF-MKVLL 350
            AFIMA    +P+++I   + +PAL+YF SV + V +EAKR  +  +   Q P     + 
Sbjct: 280 VAFIMAETINVPFIEIAKAALLPALLYFCSVFWMVHLEAKRANLCGLPKDQCPDPWAAVK 339

Query: 351 SGWHNLIPLAVLVTLLVVGFTPTYA--AGLSILSVIVAS--------------------- 387
           + W+ LIPL +LV LL  G TP ++   GL++ S+++                       
Sbjct: 340 ARWYLLIPLFILVYLLFSGRTPLFSGMVGLALTSIVILGSAIVLRLPSNALRFAFWIALG 399

Query: 388 -------------------------WFSKNHKMGPKAIIEALEQGAKNMATTAVLLVGIG 422
                                    WF K  K      + AL +GA++     +    +G
Sbjct: 400 VLCAGFFQMGIGVVFGVIAILVAICWFIKGGKDTLTICLHALVEGARHAVPVGIACALVG 459

Query: 423 LVINVISTTGIGNTFSLMINNWANGDLLTMLVLITLASLVLGMGLPVTAAYIVLGTLSAP 482
           ++I ++S TGI +TF+  I      +L   LVL  +  LVLGMG+P    YI+  +++AP
Sbjct: 460 VIIGIVSLTGIASTFASYILAVGQDNLFLSLVLTMITCLVLGMGIPTIPNYIITSSIAAP 519

Query: 483 ALYKL 487
           AL  L
Sbjct: 520 ALLDL 524