Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 639 a.a., TRAP transporter, 4TM/12TM fusion protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  191 bits (485), Expect = 1e-52
 Identities = 144/462 (31%), Positives = 227/462 (49%), Gaps = 18/462 (3%)

Query: 30  LCVLLSLAHIWFNTLSTWSELWISAIHFAGFAMICALWYPALPRWRGSKVALAFDVLLAL 89
           L  LL +  I F TL        +   F   A+  A+   A P  RG     A D  L L
Sbjct: 25  LFALLVICVIAFATLDE------ATARFGAIALSVAIVGLAHPARRGRPSGRAVDAAL-L 77

Query: 90  LALACLIYLMLAEDALYERGVKFVTSDWVFSILA-ILIVMEMIRRTMGWFIPTLILICLT 148
               C  +   A  A    G    T   V + LA +  V+ +  R  G  +  L    + 
Sbjct: 78  AGFGCAGWWFHAVKAELWTGFFVATPLSVLAGLAGVFTVIVLAARVWGRSLAILAGALIL 137

Query: 149 YVSVWGKWAGGIFHFPGLSAETLLYRSFYSSEGMFGSIAAISWSFVFMFILFGAFLVRSG 208
           Y          + HF G+     +  ++YS +G+FG +  +  S + +F++ GA L ++G
Sbjct: 138 YAFGGPYLPNAVAHF-GVGLGDFVQITWYSFDGVFGRMTGLVASNLLIFLILGAVLQQTG 196

Query: 209 VGDYIMDVSRAAAGKVVGGPGFIAVLASGLMGSVSGSSVANTVSTGVITIPMMKKAGFPA 268
            G+ ++ +S A  G+V GG    A+ AS + G ++GS  AN   TGV TIPM+K+ GF +
Sbjct: 197 AGESLIRLSTALLGRVRGGGAHAAIAASAVFGMMNGSVAANIAGTGVFTIPMIKRQGFSS 256

Query: 269 RFAAGVEAAASTGGQLMPPVMGAGAFIMASYTQIPYVDIVAVSFIPALIYFLSVAFFVRI 328
           RFA  VEAAAS+GGQL PP+M A  F+MA    +P + ++A + +PAL  +L +   V +
Sbjct: 257 RFAGAVEAAASSGGQLTPPIMAATVFVMADLVGLPLLMVIAAAALPALFKYLGLFAQVYV 316

Query: 329 EAKRMGVQIVTTSQEPFMKVLLSGWHN----LIPLAVLVTLLVVGFTPTYA--AGLSILS 382
           EA R+ ++ +     P  K+    W      L+PLAVL+   + G +P  A  AG +I +
Sbjct: 317 EALRLDIRPLAAEDIP--KLTRQDWLQSALVLVPLAVLMIAFLSGSSPAMAGLAG-TIAA 373

Query: 383 VIVASWFSKNHKMGPKAIIEALEQGAKNMATTAVLLVGIGLVINVISTTGIGNTFSLMIN 442
           ++     +   +  P  I  AL  G    A   + +  IG+V+ V++ TGI   F++ ++
Sbjct: 374 LVTGLVLTPQLRQQPIRIWWALCAGGLASARILLSVAVIGIVLAVVNETGIAIRFAVALS 433

Query: 443 NWANGDLLTMLVLITLASLVLGMGLPVTAAYIVLGTLSAPAL 484
              +  L   L++  L +LVLGMGLP   AY+++  +  P L
Sbjct: 434 EVGDAYLPLALLMAMLGALVLGMGLPTLPAYLIVAIMIVPTL 475



 Score = 47.8 bits (112), Expect = 2e-09
 Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 8/167 (4%)

Query: 518 LSLLNAPMAAEKAHELISLVPADFVETLLQQSLGLEAIGLALLSAHLIIFWLSQDSNVTP 577
           L+LL A + A      +  +PA  +  ++     +EA G+  L+AH+ + + +  S++ P
Sbjct: 442 LALLMAMLGALVLGMGLPTLPAYLIVAIMIVPTLIEA-GVLPLAAHMFVLYFAVFSSIMP 500

Query: 578 PVCLTAFAAATIAKTPPMRTGFTAWKIAKGLYLVPVLIAYTQLI-----SWDVATVVTIG 632
           P+    F AA IA    +R  FTA +I+    +VP    Y   +     S+  A ++T  
Sbjct: 501 PIAYGCFVAAPIAGADALRISFTALRISIVGLIVPFAFVYAPSLLLVAGSFSWAELLTTA 560

Query: 633 IFAIFGTYAMIGAIEGY--LEGRLNLLWRLLLAVIGVLLVWPSLPIW 677
           +     ++ +  A+ G   + GRL    R+L       ++ P++ +W
Sbjct: 561 LRLSLASWLLATALGGADPVLGRLPRHNRMLRGGAACAVMVPTVALW 607