Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 688 a.a., TRAP dicarboxylate transporter, DctM subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 73.6 bits (179), Expect = 3e-17
 Identities = 90/358 (25%), Positives = 151/358 (42%), Gaps = 41/358 (11%)

Query: 196 MFILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGLMGSVSGSSVANTVSTGV 255
           MFI  G  L  SGV + +M   +   GK  GG      +   ++ + +G   A+ V  GV
Sbjct: 307 MFIFMGLMLDESGVAERLMTSMQRLFGKTRGGLAITVTMIGIILAASTGIIGASVVLLGV 366

Query: 256 ITIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIMASYTQIPYVDIVAVSFIPA 315
           +++P M +  +  R AAGV +A+ T G L+PP       IMA    +   D+   +  P 
Sbjct: 367 LSLPAMMQQKYSPRLAAGVVSASGTLGILIPP--SIMLVIMADQMALSVGDLFMAAVFPG 424

Query: 316 LIY--FLSVAFFVRIEAKRMGVQIVTTSQEPFMKVLLSGWHNLIP-----LAVLVTLLVV 368
           +I      V  FV    K     +   +Q P  + +      ++P     LAVL ++   
Sbjct: 425 VIIGGLYLVYIFVISYLKPDVAPVPEGAQSPDWQAVKDVMVAVLPTLGLILAVLGSIFAG 484

Query: 369 GFTPTYAAGLSIL-SVIVASWFSK--NHKM--------GPKAIIEALEQGAKNMATTAVL 417
             TPT A+G+  L + ++A  + K   HK+           A I A+  GA   +     
Sbjct: 485 ICTPTEASGIGALGATLLALGYRKLTLHKLVNVLVSTFNTTAYIFAIFLGATVFSYVLRE 544

Query: 418 LVGIGLVINVISTTGIGNTFSLM-----------INNWANGDLLTMLVLITLASLVLGMG 466
           L G  L+ ++I+ TG+G   +++           + +W     +T++VL  +  +V  +G
Sbjct: 545 LGGDALIEHMIAATGLGPNGTILFILFIVFLLGFVLDWIE---ITLIVLPLMRPIVNALG 601

Query: 467 LPVTAAYIVLGTLSAPALYKLLAESQLVDLMVSGQLPEQAKAIFML--AAPDQLSLLN 522
           + +       G L  P L   +     V L  S   P    A+F L    P ++ LL+
Sbjct: 602 MDIPG----FGVLDEPTLVWFVI-LVAVTLQTSFLTPPVGFALFYLKGVCPPEIKLLD 654