Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 884 a.a., TRAP transporter, 4TM/12TM fusion protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  216 bits (549), Expect = 5e-60
 Identities = 200/732 (27%), Positives = 333/732 (45%), Gaps = 100/732 (13%)

Query: 23  VTRTISVLCVLLSLAHIWFNTLSTWSELWISAIHFAG-------FAMICA-LWYPALPRW 74
           V   I+ L +  SL  +W      W   ++S ++ +        FA++ A L YPA    
Sbjct: 42  VALLIAGLALAWSLFQLWIAQPQLWFAEYVSVLNSSQTRPLHLTFAIVLAFLAYPAFKNS 101

Query: 75  RGSKVALAFDVLLALLALACLIYLMLAED--ALYERGVKFVTSDWVFSILAILIVMEMIR 132
              ++ L FD +L  +   C  Y+    D  AL  R      +  +   + +L ++E  R
Sbjct: 102 PRDRIPL-FDWMLVAVGGFCSFYIFWFADTLALTARSGLPTQTQIIIGAIGLLCLLEASR 160

Query: 133 RTMGWFIPTLILICLTYVSVWGKWA-GGIFHFPGLSAETLLYRSFYSSEGMFGSIAAISW 191
           R +G  +  +  + L Y  +   W    +    GLS   L+   +  + G+FG    +S 
Sbjct: 161 RALGPALTIVGSLFLLYAYMGQGWLIPNLIEHEGLSFTALINAQWLDTAGVFGIPLGVST 220

Query: 192 SFVFMFILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGLMGSVSGSSVANTV 251
           +FVF+F+LFG+ L ++G G+Y + ++ A  G + GGP   AV+ S + G +SGSS+AN V
Sbjct: 221 AFVFLFVLFGSLLDKAGAGNYFIKLAFAGLGHLRGGPAKAAVVGSAMTGLISGSSIANVV 280

Query: 252 STGVITIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIMASYTQIPYVDIVAVS 311
           +TG  TIP+MK+ GF A  A  VE A+S  GQ+MPPVMGA AF+M  +  I YV+++  +
Sbjct: 281 TTGTFTIPLMKRVGFTAEQAGSVEVASSVNGQIMPPVMGAAAFLMVEFIGISYVEVIKHA 340

Query: 312 FIPALIYFLSVAFFVRIEAKRMGVQIVTTSQEPFMKVLL----------SGWHNLI---- 357
           FIPA+I ++++ + V +EA +  +  +  ++  F+ +++          +G+  LI    
Sbjct: 341 FIPAVISYIALIYIVHLEALKKDMPALGEAKS-FVGMIVKFFLGFAIAGAGFTVLIYAVG 399

Query: 358 -----------------PLAVLVTLLVVG--------------------FTPTYAAGLS- 379
                             LAV V L+ +                         YA GL  
Sbjct: 400 ALKAAAPALTGPVMMVALLAVYVWLVAIASRRPDLEVDDPNAKEIVLPQVKDVYATGLHY 459

Query: 380 ILSVIVASWFSKNHKMGPKAIIEALEQGAKNMATTAVLLVGIGLVINVISTTGIGNTFSL 439
           IL ++V  WF    +  P          AK+      L++ I L    +     G     
Sbjct: 460 ILPIVVLVWFLMVERQSP----------AKSAFYATSLMIFIILTQRPLKAFFRGLAAD- 508

Query: 440 MINNWANGDLLTMLVLITLASLVLGMGLPVTAAYIVLGTLSAPALYKLLAESQLVDLMVS 499
            +  +  G    +  LI  A  ++G+G+   AA I++ T++   +   LA   LV+ +  
Sbjct: 509 AVEEFKGGFNDLVEGLIAGARNMIGIGVATAAAGIIVATVTKTPIGTELA--GLVEQLSF 566

Query: 500 GQLPEQAKAIFMLAAPDQLSL-LNAPMAAEKAHELISLVPADFVETLLQQSLGLEAIGLA 558
           G L        ML      SL L   +     + ++S + A  V +L  Q    E + + 
Sbjct: 567 GIL------FLMLVLVGLFSLILGMGLPTTANYIVVSSLMASVVVSLGAQ----EGLIVP 616

Query: 559 LLSAHLIIFWLSQDSNVTPPVCLTAFAAATIAKTPPMRTGFTAWKIAKGLYLVPVLIAYT 618
           L++AHL +F+    ++VTPPV L +FAAA ++   P++TGFTA+  +     +P L  + 
Sbjct: 617 LIAAHLFVFYFGIMADVTPPVGLASFAAAAVSGGDPIKTGFTAFFYSLRTVALPFLFIFN 676

Query: 619 -QLISWDVATVVTIGIFAIFG-----TYAMI---GAIEGYLEGRLNLLWRLLLAVIGVLL 669
             LI + V      GIF   G     T+AM+    A +GY   +  L     L ++   L
Sbjct: 677 PTLILYGVDLGTWPGIFQAIGVFIVATFAMLLFAAATQGYFFAKSRLHESFALLLVAFTL 736

Query: 670 VWPSLPIWIRLV 681
             P+  +W+ +V
Sbjct: 737 FVPN--VWLNMV 746