Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 743 a.a., TRAP transporter for fumarate, succinate, L-malate, and 2-oxoglutarate, fused 4TM/12TM components (from data) from Dinoroseobacter shibae DFL-12

 Score =  269 bits (687), Expect = 4e-76
 Identities = 188/613 (30%), Positives = 308/613 (50%), Gaps = 77/613 (12%)

Query: 84  DVLLALLALACLIYLMLAEDALYERGVKFVTSDWVFSILAIL---IVMEMIRRTMGWFIP 140
           D++LA+  +A   YL+     L         +    SI A+    ++ME+ RR  G  + 
Sbjct: 185 DLVLAICGVAVATYLITIYGTLMRNSTGTPFAPIGISIAAVAGTALIMELTRRVAGMALI 244

Query: 141 TLILICLTYVSVWGKWAGGIFHFPGLSAETLLYRSFYSSEGMFGSIAAISWSFVFMFILF 200
            +  I L YV V G++  G  + P ++ +   +   Y+  G+ G   A+S +++ +FI+F
Sbjct: 245 VIAGIFLAYVFV-GQYLPGFLNAPAVTWQRF-FSQVYTDAGILGPTTAVSSTYIILFIIF 302

Query: 201 GAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGLMGSVSGSSVANTVSTGVITIPM 260
            AFL  S VGDY ++ + AAAG+  GGP  +A+ ASGLMG ++G+S  N V+TG +TIP+
Sbjct: 303 AAFLQASKVGDYFVNFAFAAAGQSRGGPAKVAIFASGLMGMINGTSAGNVVATGSLTIPL 362

Query: 261 MKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIMASYTQIPYVDIVAVSFIPALIYFL 320
           MKK G+  + A  VEAAASTGGQ+MPP+MGAGAFIMA  T IPY +I   + IPA++YF+
Sbjct: 363 MKKVGYHKKTAGAVEAAASTGGQIMPPIMGAGAFIMAEITGIPYTEIALAAIIPAILYFV 422

Query: 321 SVAFFVRIEAKRMGVQIVTTSQEPFMKVLLSGWHNLIPLAVLVTLLVVGFTPTYAAGLSI 380
           SV F V +EA ++G++ ++  + P    ++   +  +P+ +L+  L +G++   A  L+ 
Sbjct: 423 SVYFMVDLEAAKLGMRGMSRDELPKFNKMVRQVYLFLPIIILIYALFMGYSVIRAGTLAT 482

Query: 381 LSVIVASWFSKNHKMGPKAIIEALEQGAKNMATTAVLLVGIGLVINVISTTGIGNTFSLM 440
           ++  V SWF+   +MGP++I +A E                           I  T S+ 
Sbjct: 483 VAAAVVSWFTP-FRMGPRSIAKAFE---------------------------IAGTMSVQ 514

Query: 441 INNWANGDLLTMLVLITLASLVLGMGLPVTAAYIVLGTLSAPALYKLLAESQLVDLMVSG 500
           I           + +   A +++G+ + +T     +G   +  L  +   SQL+ L  + 
Sbjct: 515 I-----------IAVCACAGIIVGV-ISLTG----VGARFSAVLLGIADTSQLLALFFA- 557

Query: 501 QLPEQAKAIFMLAAPDQLSLLNAPMAAEKAHELISLVPADFVETLLQQSLGLEAIGLALL 560
                     M  A     LL   M    A+ + + V A           GL  +G+ LL
Sbjct: 558 ----------MCIA----ILLGMGMPTTAAYAVAASVVAP----------GLVQLGIPLL 593

Query: 561 SAHLIIFWLSQDSNVTPPVCLTAFAAATIAKTPPMRTGFTAWKIAKGLYLVPVLIAYTQL 620
           +AH  +F+ +  S +TPPV L ++AAA I+   PM T  T++KI    ++VP +  Y   
Sbjct: 594 TAHFFVFYFAVLSAITPPVALASYAAAGISGANPMETSVTSFKIGIAAFIVPFMFFYNSA 653

Query: 621 ISWDVA--TVVTIGIFAIFGTYAMIGAIEGYLEGRLNLLWRLLLAVIGVLLVWPSLPIWI 678
           I  D     V+  G  A+ G + +   ++G+  G     W L + ++   L+     I  
Sbjct: 654 ILMDGTWFEVLRAGATAVVGVFFLSSGVQGWFMGG-RAAWFLRVGLVFAALMLIEGGIMS 712

Query: 679 RLVCVALFIAIFI 691
            L+ V   +AIF+
Sbjct: 713 DLIGVGTAVAIFL 725