Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 595 a.a., TRAP transporter, 4TM/12TM fusion protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  243 bits (621), Expect = 2e-68
 Identities = 162/498 (32%), Positives = 264/498 (53%), Gaps = 18/498 (3%)

Query: 79  VALAFDVLLALLALACLIYLMLAEDALYERGVKFVTSDW--VFSILAILIVMEMIRRTMG 136
           VA     +L  L +A  +++ L    L  +   F+ S +    +I  +L+ ME  RR +G
Sbjct: 61  VARISGAILTGLGIAGCLWIALNHQMLRNQ-YGFLESGFQVALAITLLLVAMEGARRAIG 119

Query: 137 WFIPTLILICLTYVSVWGKWAGGIFHFPGLSAETLLYRSFYSSEGMFGSIAAISWSFVFM 196
           W +P + L+ L Y  ++G+   G F   G    + L     +  G++GS+  +S   V +
Sbjct: 120 WPLPLVALLALLY-GLYGQHIPGEFGHAGTPLRSFLGTLVVAEGGLWGSLTGVSVGVVAV 178

Query: 197 FILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGLMGSVSGSSVANTVSTGVI 256
           F++FGA L     G   M+V+ AAAG++ GG   ++VL+S L GS+SGS+ AN  STG I
Sbjct: 179 FVIFGAVLNAGEAGQGFMNVAAAAAGRLKGGAAKVSVLSSALFGSISGSASANVASTGAI 238

Query: 257 TIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIMASYTQIPYVDIVAVSFIPAL 316
           T+P M K G+P R AA  EA AS+GGQ+MPP+MGAGAF+M   T +PY +I+  + +PA+
Sbjct: 239 TLPAMTKLGYPRRLAAATEAVASSGGQIMPPLMGAGAFVMVELTGVPYSEIMLAALLPAI 298

Query: 317 IYFLSVAFFVRIEAKRMGVQIVTTSQEPFMK-VLLSGWHNLIPLA-VLVTLLVVGFTPTY 374
           +YF +V   +   A R  ++ +     P  + VL++    L+P + +L+ +  +G+TP Y
Sbjct: 299 LYFATVWQGLNAFASRYDLRPIPVEDRPARRQVLITSGFFLVPFSTLLIAMFALGYTPQY 358

Query: 375 AAGLSILS----VIVASWFSKNHKMGPKAIIEALEQGAKNMATTAVLLVGIGLVINVIST 430
           AA L+I +    + V      N   G   + EAL    K ++  A +++   ++I V+  
Sbjct: 359 AAALAIFTGLALLFVDISLRPNPGQGFARLAEALLNAGKQVSMIAAIIICASIIIGVLGI 418

Query: 431 TGIGNTFSLMINNWANGDLLTMLVLITLASLVLGMGLPVTAAYIVLGTLSAPALYKLLAE 490
           TG+G   + +I + + G L   L+L  LA L+LGM +P TAAY++  +++ PAL +L  E
Sbjct: 419 TGLGVKITSVILSGSGGALWPALLLTALACLLLGMEVPTTAAYVICVSVAGPALIELGLE 478

Query: 491 SQLVDLMV------SGQLPEQAKAIFMLAAPDQLSLLNAPMAAEKAHELISLVPADFV-- 542
                L V      S   P    A+F+ +   Q + L   + A      + ++P   +  
Sbjct: 479 PLQAHLFVFWFALLSTITPPVCGAVFIASGMVQENWLRVALTAMALGVGLYVIPLAMIAN 538

Query: 543 ETLLQQSLGLEAIGLALL 560
           + L++ S    A  LALL
Sbjct: 539 DALIRLSAEPGAALLALL 556