Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 639 a.a., TRAP transporter, 4TM/12TM fusion protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  218 bits (556), Expect = 6e-61
 Identities = 151/495 (30%), Positives = 244/495 (49%), Gaps = 17/495 (3%)

Query: 14  VPTRTRFGWVTRTISVLCVLLSLAHIWFNTLSTWSELWISAIHFAGFAMICALWYPALPR 73
           VPT  R     R  + L +L+ +   + +    +  L   A   A    +  L YP   +
Sbjct: 17  VPTTLR----ERAAAGLSLLIGIFVFYTSFFGAFETLIQRAGFVAMIVTMAVLLYPTAGK 72

Query: 74  WRGSKVALAFDV-LLALLALACLIYLMLAEDALYERGVKFVTSDWVFSILAILIVMEMIR 132
            R   + +  D+ ++  +A++ +  +   E  + E         W+     +L+++E+ R
Sbjct: 73  TRLRPLGIVLDLAMVGWVAVSAVYVIANFERIMVELPFAEPIDAWL-GFGTLLVILELAR 131

Query: 133 RTMGWFIPTLILICLTYVSVWGKWAGGIFHFPGLSAETLLYRSFYSSEGMFGSIAAISWS 192
           RT     P ++   + Y + +G    G F   G     +    F S  G++G + +I+ +
Sbjct: 132 RTASVVFPIIVGGMVAY-AFFGDAIPGSFGHRGFGIYYITEVMFLSDRGLWGMLVSIAST 190

Query: 193 FVFMFILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGLMGSVSGSSVANTVS 252
            +  FILFGA L+ +G G    D+S  A G   GG   IA +ASGL GS+SGSSVAN  +
Sbjct: 191 TLAAFILFGALLLHTGAGQTFFDLSARAGGASPGGAAKIATIASGLFGSISGSSVANIAT 250

Query: 253 TGVITIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIMASYTQIPYVDIVAVSF 312
           TG  TIP+MK+  +PA FA GVEA ASTGGQL PP+MG  AF+MA    + Y  IVAV+F
Sbjct: 251 TGNFTIPLMKRLRYPAPFAGGVEAVASTGGQLAPPIMGTAAFVMAELVGVNYWTIVAVAF 310

Query: 313 IPALIYFLSVAFFVRIEAKRMGVQIVTTSQEPFMKVLLSGWHNLIPLAVLVTLLVVGF-- 370
           +PAL++++ V   V + AKR G+  V  +  P  +  L  W  L P+   +  L  G   
Sbjct: 311 LPALLFYIGVFTTVHLVAKRTGLGQVDAADLPDWRAALD-WRRLAPILAGIAGLAWGIWN 369

Query: 371 --TPTYAAGLSILSVIVASWFSKNHKMGPKA-----IIEALEQGAKNMATTAVLLVGIGL 423
             +    A   ++ ++VA   +     G  A     +I A   G K +    +LLV   +
Sbjct: 370 GNSIQLTACYGMIGIMVAYTVATLTGGGTWAEVIATLIRAFRDGGKGVVIVGILLVAAQV 429

Query: 424 VINVISTTGIGNTFSLMINNWANGDLLTMLVLITLASLVLGMGLPVTAAYIVLGTLSAPA 483
            + +++ TG+G   +  I  +A   +  + V++    L+ GMGLP +AAY+++  + AP 
Sbjct: 430 FVAMVNLTGVGVAITSQILAFAGDSIWLIAVIMAGVCLIAGMGLPTSAAYVLVAAVFAPV 489

Query: 484 LYKLLAESQLVDLMV 498
           L +   +  +V L V
Sbjct: 490 LIQQGLDPVMVHLFV 504