Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 700 a.a., TRAP transporter, 4TM/12TM fusion protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  698 bits (1802), Expect = 0.0
 Identities = 362/683 (53%), Positives = 488/683 (71%), Gaps = 10/683 (1%)

Query: 27  ISVLCVLLSLAHIWFNTLSTWSELWISAIHFAGFAMICALWYPALPRWRGSKVALAFDVL 86
           I+V   L+++ HI+       SEL  +A HFAGFA + AL+YP     RG ++AL  D++
Sbjct: 22  IAVASFLIAVGHIYVAFDPVLSELQRNAFHFAGFAALAALFYPIA---RG-RLALGVDLV 77

Query: 87  LALLALACLIYLMLAEDALYERGVKFVTSDWVFSILAILIVMEMIRRTMGWFIPTLILIC 146
           L L+  A  +YL  AED +Y+RGVKF T+DW+ +I+ +L  +E+ RR  GW IP LI+I 
Sbjct: 78  LGLVVAAAAVYLSYAEDGIYDRGVKFNTADWIAAIIVVLGAIELTRRLTGWIIPALIVIA 137

Query: 147 LTYVSVWGKWAGGIFHFPGLSAETLLYRSFYSSEGMFGSIAAISWSFVFMFILFGAFLVR 206
           L+YV  WGK+ GG+F+FPGL  E++L+RS Y  + MFGSIA+IS ++VF+FI+FGAFL+R
Sbjct: 138 LSYVVWWGKFVGGVFNFPGLKLESVLFRSVYGDDAMFGSIASISSTYVFLFIIFGAFLLR 197

Query: 207 SGVGDYIMDVSRAAAGKVVGGPGFIAVLASGLMGSVSGSSVANTVSTGVITIPMMKKAGF 266
           SG G+++++++RA AG++VGGPG +AV+ASGL G++SGS+VANT STGVITIP+MK+AGF
Sbjct: 198 SGAGEFVINLARAVAGRMVGGPGIVAVIASGLTGTISGSAVANTASTGVITIPLMKRAGF 257

Query: 267 PARFAAGVEAAASTGGQLMPPVMGAGAFIMASYTQIPYVDIVAVSFIPALIYFLSVAFFV 326
             +FA GVEAAASTGGQLMPP+MGAGAF+MAS+T IPY  IVAV+ +PAL+YFLSVAFFV
Sbjct: 258 QPKFAGGVEAAASTGGQLMPPIMGAGAFVMASFTAIPYETIVAVAALPALLYFLSVAFFV 317

Query: 327 RIEAKRMGVQIVTTSQEPFMKVLLSGWHN-LIPLAVLVTLLVVGFTPTYAAGLSILSVIV 385
           RIEA+R  +  +    +   +  L G  + ++P+ +L+ +LV GFTPTYAA   I++V+ 
Sbjct: 318 RIEARRQNLPPMADEGQTLRRAFLEGGASFVLPIGLLIGMLVSGFTPTYAAVFGIIAVVA 377

Query: 386 ASWFSKNHKMGPKAIIEALEQGAKNMATTAVLLVGIGLVINVISTTGIGNTFSLMINNWA 445
           +SW ++  +MGP+A+ EAL  G K M  TAVLL  +GLV+NVI+T G+GNTFSLMI  W+
Sbjct: 378 SSWLTRT-RMGPRAVFEALVMGTKGMILTAVLLCSVGLVVNVIATAGVGNTFSLMIAAWS 436

Query: 446 NGDLLTMLVLITLASLVLGMGLPVTAAYIVLGTLSAPALYKLLAESQLVDLMVSGQLPEQ 505
            G++L  +VLI LASLVLGMGLPVTAAYIVL TLSAPAL  ++A+  ++  + +G LP  
Sbjct: 437 GGNILVAIVLIALASLVLGMGLPVTAAYIVLATLSAPALAGMIADQVVIAQIAAGTLPPT 496

Query: 506 AKAIFMLAAPDQLSLLNAPMAAEKAHELISLVPADFVETLLQQSLGLEAIGLALLSAHLI 565
           A+AIFML APDQ++LL APM+   A  L+  +P +    L    +  EA   ALLSAH+I
Sbjct: 497 AQAIFMLGAPDQMALLAAPMSEADATALVRGLPLEVAAPLRDLVVPPEAAVAALLSAHMI 556

Query: 566 IFWLSQDSNVTPPVCLTAFAAATIAKTPPMRTGFTAWKIAKGLYLVPVLIAYTQLISWDV 625
           +FWLSQDSNVTPPV L AF AA IAK P M TG  +WK+AKGLY+VPVL AYT L+S D 
Sbjct: 557 VFWLSQDSNVTPPVALAAFTAAAIAKAPAMATGVASWKLAKGLYIVPVLFAYTPLLSGDW 616

Query: 626 ATVVTIGIFAIFGTYAMIGAIEGYLEGRLNLLWRLLLAVIGVLLVWPSLPIWIR---LVC 682
             +V +  FA+ G YA+   I+G +E  L L  R+L  + G+  +WP L IW     +VC
Sbjct: 617 GAMVQVFAFAVVGIYALAAGIQGCMERPLGLFPRVLSGLAGLACLWPGL-IWANVAGVVC 675

Query: 683 VALFIAIFIYSGKTAARVERAHS 705
           +AL +A  +  G   A   RA +
Sbjct: 676 LALLLAWNLRDGVPVAGAPRAET 698