Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 428 a.a., TRAP dicarboxylate transporter, DctM subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 74.7 bits (182), Expect = 9e-18
 Identities = 70/275 (25%), Positives = 121/275 (44%), Gaps = 11/275 (4%)

Query: 196 MFILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGLMGSVSGSSVANTVSTGV 255
           MFIL G  ++R+G+   +          + GG     V +  +  + SGSSVA   + G 
Sbjct: 61  MFILLGEIILRAGIATRMYTAVAKWLSWLPGGLMHANVGSCAVFAATSGSSVATVATVGT 120

Query: 256 ITIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIMASYTQIPYVDIVAVSFIPA 315
           +  P ++K  +      G  AA  T G L+PP +    + + + T +P + +  V  IP 
Sbjct: 121 VAYPEIEKRQYNEPLFLGTLAAGGTLGILIPPSIALILYGLLTDTSVPELYLAGV--IPG 178

Query: 316 ---LIYFLSVAFFVRIEAKRMGVQIVTTSQEPFMKVLLSGWHNLIPLAVLVTLLVVGF-T 371
               ++F+ V  F        G   V TS    ++ L      L+  AV+V  +  G  T
Sbjct: 179 AMLALFFMLVVIFACFMRPGWGGSPVETSWRDRLEALPDLLPPLVLFAVVVGSIYTGLAT 238

Query: 372 PTYAAGLSILSVI-VASWFSKNHKMGPKAIIEALEQGAKNMATTAVLLVGIGLVINVIST 430
           PT AA + ++  I +A+WF     +  + +IEA E    + A   ++++    +  V+  
Sbjct: 239 PTEAASIGVVCAIGIAAWF---RALSVRMLIEAFESTMCSTAMVMIIILAAVFLNFVLGF 295

Query: 431 TGIGNTFSLMINNWANGDLLTMLVLITLASLVLGM 465
            G+       I+      + TM+V+I    L+LGM
Sbjct: 296 MGVTQAIIDGIDALGWTPMQTMMVIIVF-YLLLGM 329



 Score = 28.5 bits (62), Expect = 7e-04
 Identities = 47/237 (19%), Positives = 81/237 (34%), Gaps = 36/237 (15%)

Query: 448 DLLTMLVL--ITLASLVLGMGLPVTAAYI-VLGTLSAPALYKLLAESQLVDLMVSGQLPE 504
           DLL  LVL  + + S+  G+  P  AA I V+  +   A ++ L+   L++   S     
Sbjct: 217 DLLPPLVLFAVVVGSIYTGLATPTEAASIGVVCAIGIAAWFRALSVRMLIEAFESTMCST 276

Query: 505 QAKAIFMLAAPDQLSLLNAPMAAEKAHELISLVPADFVETLLQQSLGLEAIGLALLSAHL 564
               I +LAA                               L   LG   +  A++    
Sbjct: 277 AMVMIIILAA-----------------------------VFLNFVLGFMGVTQAIIDGID 307

Query: 565 IIFWLSQDSNVTPPVCLTAFAAATIAKTPPMRTGFTAWKIAKGLYLVPVLIAYTQLISWD 624
            + W    + +   V            +  + T    + I   +   PV       +  +
Sbjct: 308 ALGWTPMQTMMVIIVFYLLLGMFMETLSMMLTTIPVVFPIVAHMGFDPVWFGIMITVLME 367

Query: 625 VATV---VTIGIFAIFGTYAMIGAIEGYLEGRLNLLWRLLLAVIGVLLVWPSLPIWI 678
            A +   + + ++ + GT    G       G L  L  +L A+IG LL +P L  W+
Sbjct: 368 AALITPPIGLNLYVVHGTRTRGGKFNDVSYGALPFLIAML-ALIGFLLTFPDLATWL 423