Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., TRAP dicarboxylate transporter, DctM subunit (RefSeq) from Shewanella sp. ANA-3

 Score = 75.9 bits (185), Expect = 4e-18
 Identities = 110/454 (24%), Positives = 185/454 (40%), Gaps = 96/454 (21%)

Query: 197 FILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGLMGSVSGSSVANTVSTGVI 256
           FIL  AFL   GV   I+D +  + G + GG    +V+A  L  +VSGSS A   + G I
Sbjct: 63  FILSSAFLSTGGVARRIIDFAMDSIGHIRGGLAMASVMACMLFAAVSGSSPATVAAIGSI 122

Query: 257 TIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIMASYTQIPYVDIVAVSFIPAL 316
            I  M KAG+P +FAAGV   + T G L+PP       + A+ T++    +     IP L
Sbjct: 123 VIVGMVKAGYPEKFAAGVITTSGTLGILIPP--SIVMLVYAAATEVSAARMFMAGLIPGL 180

Query: 317 I--YFLSVAFFVRIEAKRMGVQIVTTSQEPFMKVLLSGWHNLIPLAVLVTLL--VVG--F 370
           +  + L +  ++    K     + +     F ++ +S    L  LA+++ +L  + G   
Sbjct: 181 MMGFLLMIVIYIVARFK----NLPSRPFPGFKQLGISSAKALGGLALIIIVLGSIYGGVA 236

Query: 371 TPTYAAGLSILSVIV--------------ASWFSKNHKMGPKAIIEALEQGAKNMATTAV 416
           +PT A+ ++ +                   +W + N  + P AI+       +N+   A+
Sbjct: 237 SPTEASAVACMYAYFIAVFGYRDIGPLKNVAWRNPNEPI-PSAIV-------RNLGHMAL 288

Query: 417 LLVGIGLVINVISTTGIGNTFSLMINNWANGDLLTMLVLIT------LASLVLGMGLPVT 470
            L+   +   +      G   S+M+       +L   VL T      +A  ++GMGLP  
Sbjct: 289 GLIKTPIDKEIRHVVRDGAKVSIMLLFIIANAMLFAHVLTTERIPHIIAEHIVGMGLPAW 348

Query: 471 AAYIVLGTLSAPALYKLLAESQLVDLMVSGQLPEQAKAIFMLAAPDQLSLLNAPMAAEKA 530
              I++  L                L+ +G   E          P  + L+ AP+     
Sbjct: 349 GFLIIVNLL----------------LLAAGNFME----------PSAIVLIMAPI----- 377

Query: 531 HELISLVPADFVETLLQQSLGLEAIGLALLSAHLIIFWLSQDSNVTPPVCLTAFAAATIA 590
                L P       +   LG++ I L      +I+    +   +TPPV L  F  A I 
Sbjct: 378 -----LFP-------IATHLGIDPIHLG-----IIMVVNMEIGMLTPPVGLNLFVTAGI- 419

Query: 591 KTPPMRTGFT-AWKIAKGLYLVPVLIAYTQLISW 623
                 TG +  W I   L  + +++A+  LI++
Sbjct: 420 ------TGRSIGWVIQSVLPWLALMLAFLALITY 447