Pairwise Alignments

Query, 335 a.a., C4-dicarboxylate ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., alpha-ketoglutarate TRAP transporter, solute receptor component (from data) from Pseudomonas stutzeri RCH2

 Score =  145 bits (365), Expect = 2e-39
 Identities = 99/325 (30%), Positives = 157/325 (48%), Gaps = 14/325 (4%)

Query: 5   RLTQTL--LAAITSFGLIGGAYAAEERSYILATASTGGTYYPVGVALATLTKVKLTPSYH 62
           RLT+ L  LAA  +F     A AA     IL T  T G YYP+GVAL+   +        
Sbjct: 2   RLTKRLGLLAAAAAFTASTAAVAAPTFINIL-TGGTSGVYYPIGVALSQ--QYNKIDGAK 58

Query: 63  FSLSAISSAGSGENVKLMNDNEAQFAILQGLYGAWAWAGEGPYAERQNQLRSVSMLWQNV 122
            S+ A  ++    N+      E  F++   +  AW    +  +     +LR+++  + N 
Sbjct: 59  TSVQATKASVENLNLLQAGRGELAFSLGDSVEDAWNGVEDAGFKAPLKRLRAIAGTYNNY 118

Query: 123 EHFIVRSDLAPTGTIADLASMKGKKFSIGSKNSGTEFSGRQIMKGVGVD-PDTFNLAYLG 181
              +  ++      I  L  +KGK+ S+G+  SGTE + R I K  G+D  D   + +L 
Sbjct: 119 IQIVASAESG----IKTLDDLKGKRISVGAPKSGTELNARAIFKAAGLDYKDMGRVEFLP 174

Query: 182 YGGSASALQNGTIDGMNTPAGVPVGAVTQAFAAMGNDIKILSFTDEQIKQANGNYNLWTK 241
           Y  S   ++N  +D     +G+ + A+    + M   +  +    E +++   +  L   
Sbjct: 175 YAESVELIKNRQLDATLQSSGLGMAAIRDLASTM--PVTFVEIPAEVVEKIESDAYLAGV 232

Query: 242 FDIPANTYPGVDKTITTIAQPNFLAVRTDISEEDVYQLTKAMYENLAFLQGIHKATKDMA 301
             IPA TY G D  + T+A  N L     +S+E  YQ+TK M++NLA L   H A KD+ 
Sbjct: 233 --IPAGTYDGQDADVPTVAITNILVTHEKVSDEVAYQMTKLMFDNLAALGNAHSAAKDIK 290

Query: 302 IEKAIEGLPMPLHAGAARYYQEVGI 326
           +E A + LP+PLH GA R+Y+E G+
Sbjct: 291 LENATKNLPIPLHPGAERFYKEAGV 315