Pairwise Alignments

Query, 335 a.a., C4-dicarboxylate ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 350 a.a., TRAP transporter solute receptor, TAXI family (NCBI) from Rhodospirillum rubrum S1H

 Score = 77.4 bits (189), Expect = 5e-19
 Identities = 79/336 (23%), Positives = 142/336 (42%), Gaps = 34/336 (10%)

Query: 11  LAAITSFGLIGGAYAAEERSYILATASTGGTYYPVGVALATLTKVKLTPSYH-------- 62
           +A + +  ++  + A E R   + T  T G Y+PVG  +A+L  +   P           
Sbjct: 20  MAGMVAPAVVRPSKAQELRFLRIGTGRTSGAYFPVGGLIASL--ISNPPGSRPCEKGGSC 77

Query: 63  ----FSLSAISSAGSGENVKLMNDNEAQFAILQG--LYGAWAWA---GEGPYAERQNQLR 113
                   A S+ GS +N+  +   +   AI Q    Y A++     G   +AE    LR
Sbjct: 78  GVPGLIAVAQSTGGSVDNIVGLQSGQLDLAICQADVAYDAYSRTDAKGVPDFAE----LR 133

Query: 114 SVSMLWQNVEHFIVRSDLAPTGTIADLASMKGKKFSIGSKNSGTEFSGRQIMKGVGVDPD 173
           +V+ L++   H + R D      I+ LA ++GK+  +G   SGT  S R ++  +G+   
Sbjct: 134 AVASLYKESLHLVARVDSG----ISTLADLRGKRVGLGDPASGTLVSVRLLLSALGLGEK 189

Query: 174 TFNLAYLGYGGSASALQNGTIDGMNTPAGVPVGAVTQAFAAMGNDIKILSFTDEQIKQAN 233
                Y     +A  + +G +D      G PV  +T        ++ ++      ++   
Sbjct: 190 AVKADYDPPSAAADKVADGRLDAFFFFGGEPVALITSLRERA--EVTVVPVDGPAVEDLA 247

Query: 234 GNYNLWTKFDIPANTYPGVDKTITTIAQPNFLAVRTDISEEDVYQLTKAMYE---NLAFL 290
                 T   I    Y      I T+     L  R D+ +  +  +T A++     + F 
Sbjct: 248 ARSPFLTLGLIRQQAYDN-PLPIVTLQVAAVLVTRADMDDALIEAITAALWHRQTKILFE 306

Query: 291 QGIHKATKDMAIEKAIEGLPMPLHAGAARYYQEVGI 326
           +G  + T+   + +A++G+ +PLH GA RYY++ GI
Sbjct: 307 KGPPQITQ-ATLGQAVQGIAVPLHPGAMRYYRKEGI 341