Pairwise Alignments

Query, 335 a.a., C4-dicarboxylate ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 350 a.a., TRAP transporter solute receptor, TAXI family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 48.9 bits (115), Expect = 2e-10
 Identities = 72/281 (25%), Positives = 113/281 (40%), Gaps = 29/281 (10%)

Query: 3   QKRLTQTLLAAITSFGLIGGAYAAEERSYILATASTGGTYYPVGVALATLTKVKLTPSYH 62
           ++RL Q   A +    L  GA AA+E    + T    GTY  +G  ++ L          
Sbjct: 5   KRRLFQIFRAGLALL-LGSGAVAAQEFEKNILTGGPTGTYIQIGRDISNLVD-----QCG 58

Query: 63  FSLSAISSAGSGENVKLMNDNEA-QFAILQG---LYGAWAWAGEGPYAERQNQLRSVSML 118
            +L+ + SAGS EN   +    A QF I+Q     Y     A +   A     +R    L
Sbjct: 59  QTLNVVESAGSLENFLGVRQRRATQFGIVQSDVLEYLKTYSASDQNIARAIAGVRIAFPL 118

Query: 119 WQNVEHFIVRSDLAPTGTIADLASMKGKKFSIGSKNSGTEFSGRQIMKGVGVDPDTFNLA 178
           +    H +   D+    T ADLA   GK+ +IG ++SGT  +    +  + VD     L 
Sbjct: 119 YNEEVHLLATRDIT---TPADLA---GKRVAIGVRDSGTFLTASLFLDLLEVDAG--ELL 170

Query: 179 YLGYGGSASALQNGTIDGMNTPAGVPVGAVTQAFAAMGNDIKILSF--TDEQIKQANGNY 236
            +G   + + L  G ID     AG P    T+ F+    D         D+ + +A    
Sbjct: 171 TIGPDAAMAQLLAGEIDAFFYVAGAP----TRLFSETEIDANRFHLVPVDDPLLEA---- 222

Query: 237 NLWTKFDIPANTYPGVDKTITTIAQPNFLAVRTDISEEDVY 277
            ++   +IPA TY    + +  +A    L     I + + Y
Sbjct: 223 -VYLPSEIPAGTYAFQAEPVPVVAVKAVLMTYEYIPQRNAY 262