Pairwise Alignments

Query, 335 a.a., C4-dicarboxylate ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., TRAP transporter for fumarate, succinate, L-malate, and 2-oxoglutarate, solute receptor component (from data) from Dinoroseobacter shibae DFL-12

 Score = 95.9 bits (237), Expect = 1e-24
 Identities = 93/335 (27%), Positives = 155/335 (46%), Gaps = 18/335 (5%)

Query: 1   MKQKRLTQTLLAAITSFGLIGGAYAAEER----SYILATASTGGTYYPVGVALATLTKVK 56
           MK   +T T +A   S  ++  A A +      S+ + TAS GGTY+  G   A L   +
Sbjct: 1   MKFTLMTGTAMAVALSATVVTTATAQDRDGWPDSFTVGTASQGGTYFAYGSGWANLVAEE 60

Query: 57  LTPSYHFSLSAISSAGSGENVKLMNDNEAQFAILQGLYGAWAWAGEGPYAERQNQLRSVS 116
           L      S     + G  +N+ L++  +AQF +      A + AG  P A       + +
Sbjct: 61  LG----LSGGGEVTGGPMQNMALVHTGDAQFGMTTMGPAAESLAGTNPIAPGLQMDNACA 116

Query: 117 MLWQNVEHFIVRSDLAPTGTIADLASMK-GKKFSIGSKNSGTEFSGRQIMKGVGVDPDTF 175
           M       F V + L+ +G IA +A +  G K   G   S ++    ++M+ +GV+ +  
Sbjct: 117 MFPMYQTPFSVTA-LSSSG-IASIADIPDGAKIGFGPAGSTSDTYFPRMMEALGVNFERR 174

Query: 176 NLAYLGYGGSASALQNGTIDGMNTPAGVPVGAVTQAFAAMGNDIKILSFTDEQIKQANGN 235
           N  +   GG    LQ+G +D +   AGVPV AV+Q    +  DI I+ FT+E+  +   +
Sbjct: 175 NGGWSDLGGQ---LQDGLLDVIAFAAGVPVPAVSQL--EVQTDINIIEFTEEEQAKIMAD 229

Query: 236 YNLWTKFDIPANTYPGVDKTITTIAQPNFLAVRTDISEEDVYQLTKAMYENLAFLQGIHK 295
           + + ++F I A TY  ++    +++  NF     D+    V   T  +  + A + GIHK
Sbjct: 230 FPV-SEFSIGAGTYSTLEADARSVSMWNFAIANCDLPASFVKAATDVVMSDNARMVGIHK 288

Query: 296 ATKDMAIEKAIEGLPMPLHAGAARYYQE-VGIKIP 329
           A +    E   +   +  H GAA +++E  G  IP
Sbjct: 289 AARSTLPENWDKNKVLKWHPGAAEWFKENAGADIP 323