Pairwise Alignments

Query, 335 a.a., C4-dicarboxylate ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., TRAP transporter solute receptor, TAXI family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  369 bits (947), Expect = e-107
 Identities = 193/335 (57%), Positives = 237/335 (70%), Gaps = 4/335 (1%)

Query: 4   KRLTQTLLAAITSFGLIGGAYAAEERSYILATASTGGTYYPVGVALATLTKVKLTPSYHF 63
           K L     AA  S  +  GA  AE  +YILATASTGGTYYPVGVAL+TL KVKL PS   
Sbjct: 2   KHLVCAAAAAAISLSVATGA-KAEGANYILATASTGGTYYPVGVALSTLVKVKLEPSQKI 60

Query: 64  SLSAISSAGSGENVKLMNDNEAQFAILQGLYGAWAWAGEGPYAE--RQNQLRSVSMLWQN 121
            +SAISSAGSGENV+L+ + EAQF I+QGL+G +A  G GP  E  +Q  LRSV+MLWQN
Sbjct: 61  GMSAISSAGSGENVRLIREGEAQFGIMQGLFGYYAATGTGPLEESGKQENLRSVTMLWQN 120

Query: 122 VEHFIVRSDLAPTGTIADLASMKGKKFSIGSKNSGTEFSGRQIMKGVGVDPDT-FNLAYL 180
           VEHF+V +D APTGTI DL ++KG+  ++G +NSGT  S   I+   GVD ++ + L + 
Sbjct: 121 VEHFVVAADAAPTGTIEDLVALKGEAMALGRQNSGTIGSNATILSSFGVDIESDYELVFG 180

Query: 181 GYGGSASALQNGTIDGMNTPAGVPVGAVTQAFAAMGNDIKILSFTDEQIKQANGNYNLWT 240
           GYG SA ALQNG + G+ TPAGVPVGA++Q  AA G+ + +L+FT EQ  QA+G   LWT
Sbjct: 181 GYGPSAEALQNGQVKGIGTPAGVPVGAISQLMAAAGDSVTLLNFTPEQAAQADGGRELWT 240

Query: 241 KFDIPANTYPGVDKTITTIAQPNFLAVRTDISEEDVYQLTKAMYENLAFLQGIHKATKDM 300
            + I A TYPG  + + TIAQPNFLA   D+ +E VYQ+TK +YENL FL  IH ATK M
Sbjct: 241 PYTIAAGTYPGQAEDVQTIAQPNFLATSADLPDEHVYQITKTIYENLPFLNAIHPATKAM 300

Query: 301 AIEKAIEGLPMPLHAGAARYYQEVGIKIPAHLMPQ 335
           AIE AI GLP+PLH GA RYY+EVGI+IP  L  Q
Sbjct: 301 AIESAIAGLPLPLHPGAQRYYEEVGIEIPDRLKAQ 335