Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake from Pseudomonas fluorescens FW300-N2E2

 Score =  385 bits (989), Expect = e-111
 Identities = 218/445 (48%), Positives = 277/445 (62%), Gaps = 21/445 (4%)

Query: 6   IALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDGLSL 65
           + ++EDD  V     Q L L             AL  ++      V+SD+RLP  DGL L
Sbjct: 7   VLIVEDDPHVLLGCKQALTLEDIPCIGVGSAEEALERVDDNFAGIVISDIRLPGIDGLEL 66

Query: 66  LVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQYQNA 125
           L  LK     +PV+LITGHGD+ MAV A+ +GA+DF+EKPF PERL +   +A+ Q   A
Sbjct: 67  LTRLKARDRSLPVVLITGHGDISMAVGAMQKGAYDFMEKPFSPERLVDVARRALEQRSLA 126

Query: 126 LSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELVAQC 185
               S    LA    LE  +IG+  ++Q LR  IA VA    NV+I GETG GKELVA+C
Sbjct: 127 REVSSLRRQLAERDSLEGRIIGRSPAMQHLRALIANVADTSANVLIEGETGTGKELVARC 186

Query: 186 LHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLFLDE 245
           LH  S R   QFVA+NCG +PENLFESE+FGHEA AFTGA KRRIGK+E AD GTLFLDE
Sbjct: 187 LHDFSRRHDKQFVALNCGGLPENLFESEIFGHEANAFTGAGKRRIGKIEHADGGTLFLDE 246

Query: 246 IESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAK---EELRQHAEFRQDLFYR 302
           +ESMPL +Q+K+LRVLQ+  +ER+GSNQ + +D RVIAA K   +E+ +  +FR DL+YR
Sbjct: 247 VESMPLPLQIKLLRVLQERTLERLGSNQSVAVDCRVIAATKSDLDEMGRTGQFRSDLYYR 306

Query: 303 LNVAQLYLPPLRERGDDILLLFEHFCVQVKPTW-RSLSEADRLA---LLTYRWPGNVREL 358
           LNV  L LPPLRER +DIL LFEHF  Q    + R++ E D      L+++ WPGNVREL
Sbjct: 307 LNVVTLELPPLRERREDILQLFEHFLQQSSLRFDRTVPELDNQTLSNLMSHDWPGNVREL 366

Query: 359 RNVALRYALDDSISVGEILASCPGMTEEEASA---GLPLAIQVHNFERKVIAQALHRHQG 415
           RNVA RYAL             P      AS    GL  A  V  FER ++  AL R  G
Sbjct: 367 RNVAERYAL-----------GLPAFKRSGASGGNQGLAFAEAVEAFERNLLVDALQRSGG 415

Query: 416 NISEVMKELDLPRRTLNQKMQKFGL 440
           N+++  +EL + + TL  K++K+GL
Sbjct: 416 NLTQASQELGMAKTTLFDKVKKYGL 440