Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 463 a.a., C4-dicarboxylate transport transcriptional regulatory protein from Pseudomonas fluorescens FW300-N2E2

 Score =  380 bits (976), Expect = e-110
 Identities = 215/447 (48%), Positives = 287/447 (64%), Gaps = 10/447 (2%)

Query: 6   IALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDGLSL 65
           + LI+DD  +RQA  Q L LAG  +   A+       + +     VVSD+R+P  DGL L
Sbjct: 9   VVLIDDDPHLRQALSQTLDLAGLKILPLAEAKGVAGQLPRDWPGVVVSDIRMPGMDGLEL 68

Query: 66  LVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQYQNA 125
           L  L    + +PV+LITGHGDV +AV+A+  GA+DF+EKPF  + L ++V +A++  +  
Sbjct: 69  LNELHAQDAELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFASDHLLDSVRRALALRRLV 128

Query: 126 LSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELVAQC 185
           L ++S    L+    L   L+GQ   +  LREQI  +AA   +V+I GETG GKE+VA+ 
Sbjct: 129 LDNRSLRLALSDRHELSARLVGQSTPMLRLREQIGALAATRADVLILGETGAGKEVVARA 188

Query: 186 LHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLFLDE 245
           LH  S R+ G FVAIN GA+ E++ ESELFGHE GAFTGA KRRIGK E A+ GTLFLDE
Sbjct: 189 LHDLSSRRNGPFVAINAGALAESVVESELFGHEPGAFTGAQKRRIGKFEFANGGTLFLDE 248

Query: 246 IESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELRQHAE---FRQDLFYR 302
           IESM L +QVK+LR+LQ+ VVER+G N  I +D+RVIAA KE+LRQ A+   FR DL+YR
Sbjct: 249 IESMSLDVQVKLLRLLQERVVERLGGNHQIPLDIRVIAATKEDLRQAADQGRFRADLYYR 308

Query: 303 LNVAQLYLPPLRERGDDILLLFEHFCVQVKPTW----RSLSEADRLALLTYRWPGNVREL 358
           LNVA L +PPLRERG+D L+LF+HF  +           L  A R  LL + WPGNVREL
Sbjct: 309 LNVAPLRIPPLRERGEDTLMLFQHFADEASARHGLPPHELQPAQRALLLRHSWPGNVREL 368

Query: 359 RNVALRYALDDSISVGEILA-SCPGMTEEEASAGLPLAIQVHNFERKVIAQALHRHQGNI 417
           +N A R+AL   +++        PG   E  S G  L+ QV NFE+ +IA  L R   ++
Sbjct: 369 QNAAERFALGLELALDNSAPDGNPGAPVELVSGG--LSEQVENFEKTLIAAELARPHSSV 426

Query: 418 SEVMKELDLPRRTLNQKMQKFGLLRGD 444
             + + L +PR+TL+ K++K GL  GD
Sbjct: 427 RSLAEALGIPRKTLHDKLRKHGLHFGD 453