Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., Flagellar regulatory protein FleQ from Pseudomonas fluorescens FW300-N2E2

 Score =  283 bits (723), Expect = 1e-80
 Identities = 182/460 (39%), Positives = 254/460 (55%), Gaps = 45/460 (9%)

Query: 5   RIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDGLS 64
           ++ L+EDD  +R+A    L LAG D A       AL A+ +++F+ VVSDV +P  DG  
Sbjct: 4   KVLLVEDDRALREALADTLVLAGHDYAAVGSAEEALLAVGREAFSLVVSDVNMPGMDGHQ 63

Query: 65  LLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQYQN 124
           LL  L+  Q  +PV+L+T HG V+ AV A+ QGA D++ KPF+P+ L + VA+      +
Sbjct: 64  LLGLLRARQPQLPVLLMTAHGAVERAVDAMRQGAADYLVKPFEPKALLDLVAR------H 117

Query: 125 ALSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELVAQ 184
           AL S        + +G   + I +  S QLL E  A+VA  D+ V+I GE+G GKE++A+
Sbjct: 118 ALGS-------LAVEGEGPVAI-EPASAQLL-ELAARVARSDSTVLISGESGTGKEVLAR 168

Query: 185 CLHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLFLD 244
            +HQ S R    F+AINC AIP+N+ E+ LFGHE G+FTGA+  + GK E AD GT+ LD
Sbjct: 169 YIHQQSRRASEPFIAINCAAIPDNMLEATLFGHEKGSFTGAIAAQPGKFEQADGGTILLD 228

Query: 245 EIESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELRQH---AEFRQDLFY 301
           EI  MP+ +Q K+LRVLQ+  VERVG+ +PI++D+RV+A    +L        FR+DL+Y
Sbjct: 229 EISEMPMGLQAKLLRVLQEREVERVGARKPISLDIRVVATTNRDLASEVAAGRFREDLYY 288

Query: 302 RLNVAQLYLPPLRERGDDILLLFEHF----CVQVKPTWRSLSEADRLALLTYRWPGNVRE 357
           RL+V  L   PLRER  DIL L E        ++K     LS   R  L+ Y WPGNVRE
Sbjct: 289 RLSVFPLAWRPLRERTADILPLAERLLNKHVNKMKHAAARLSAEARACLVAYPWPGNVRE 348

Query: 358 LRNVALRYAL---------DDSISVGEI-------------LASCPGMTEEEASAGLPLA 395
           L N   R  +         +D    G +              A  P +  E  SAG  L 
Sbjct: 349 LDNAIQRALILQQGGLIQPEDFCLAGPVACAPLPALSPVPAAAFAPSVEVEGESAG-ALG 407

Query: 396 IQVHNFERKVIAQALHRHQGNISEVMKELDLPRRTLNQKM 435
             +   E ++I   L   +G   E  + L +  RTL  K+
Sbjct: 408 DDLRRREFQMIIDTLRAERGRRKEAAERLGISPRTLRYKL 447