Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  391 bits (1004), Expect = e-113
 Identities = 223/444 (50%), Positives = 290/444 (65%), Gaps = 13/444 (2%)

Query: 5   RIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDGLS 64
           ++ LI+DD  +RQA  Q L LAG  VA   D     A +       VVSD+R+P  DGL 
Sbjct: 12  QVLLIDDDPHLRQALSQTLDLAGLKVASLGDARELAARLPADWPGVVVSDIRMPGIDGLE 71

Query: 65  LLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQYQN 124
           LL  L+   S +PVILITGHGD+ +AV+A+  GA+DF+EKPF  E L ++V +A++  Q 
Sbjct: 72  LLQQLRARDSELPVILITGHGDIQLAVQAMRAGAYDFLEKPFPSEALLDSVRRALALRQL 131

Query: 125 ALSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELVAQ 184
            L ++S    LA  + L   L+GQ K++  LREQI  +A    +V+I GETG GKE+VA+
Sbjct: 132 VLDNRSLRLALADRQQLSARLLGQSKAMLRLREQIGALAGTQADVLILGETGAGKEVVAR 191

Query: 185 CLHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLFLD 244
            LH  S R+ G FVAIN GA+ E++ ESELFGHE GAFTGA KRRIGK E A+ GTLFLD
Sbjct: 192 ALHDLSNRRNGPFVAINAGALAESVVESELFGHEPGAFTGAQKRRIGKFEFANGGTLFLD 251

Query: 245 EIESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELRQHAE---FRQDLFY 301
           EIESM L +QVK+LR+LQ+ VVER+G NQ I +D+RVIAA KE+LR  A+   FR DL+Y
Sbjct: 252 EIESMSLDVQVKLLRLLQERVVERLGGNQSIALDIRVIAATKEDLRVAADQGRFRADLYY 311

Query: 302 RLNVAQLYLPPLRERGDDILLLFEHFCVQVKPTW----RSLSEADRLALLTYRWPGNVRE 357
           RLNVA L +PPLRER +DILLLF+HF            R L    R ALL + WPGNVRE
Sbjct: 312 RLNVAPLGIPPLRERNEDILLLFQHFAEAGAQRHGLPIRELQPEQRAALLRHAWPGNVRE 371

Query: 358 LRNVALRYALDDSISVGEILASCPGMTEEEASAGL-PLAIQVHNFERKVIAQALHRHQGN 416
           L+N A R+AL   + + +     PG     + AG   L+ QV  FER +IA  L+R  G+
Sbjct: 372 LQNTAERFALGLGLGLDQ-----PGAEPTSSVAGTGNLSEQVEAFERALIAAELNRPHGS 426

Query: 417 ISEVMKELDLPRRTLNQKMQKFGL 440
           +  V + L +PR+TL+ K++K GL
Sbjct: 427 LRSVAEALGVPRKTLHDKLRKHGL 450