Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 447 a.a., alpha-ketoglutarate DNA-binding response regulator (mifR) (from data) from Pseudomonas stutzeri RCH2

 Score =  413 bits (1061), Expect = e-120
 Identities = 225/450 (50%), Positives = 301/450 (66%), Gaps = 19/450 (4%)

Query: 3   SQRIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDG 62
           S ++  I+D+  +RQA  QWL+L+GF V  F+    AL A+++     ++SDVR+PD DG
Sbjct: 2   SGQVIFIDDEAAIRQAVQQWLELSGFQVRTFSRAREALTALDRDFPGVLISDVRMPDLDG 61

Query: 63  LSLLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQY 122
           L LL  L  + + +PVI++TGHGDV MAV+AL QGA+DFIEKPF PERL ++V +A+ + 
Sbjct: 62  LGLLEQLVALDADLPVIMVTGHGDVPMAVQALRQGAYDFIEKPFTPERLLDSVRRAMDKR 121

Query: 123 QNALSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELV 182
           +    ++      A    +E  L+G  +++  LR Q+ ++A  D NV+I GETG GKE V
Sbjct: 122 RLVCENRQLREQFARKGRIESQLLGVSRAMDNLRRQVLELAGTDVNVLIRGETGSGKEQV 181

Query: 183 AQCLHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLF 242
           A+CLH  S R  G FVA+NC AIPE +FESELFGHE+GAFTGA  +RIG++E A  GTLF
Sbjct: 182 ARCLHDFSPRAGGPFVALNCAAIPETIFESELFGHESGAFTGAQGKRIGRIEHAAGGTLF 241

Query: 243 LDEIESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELRQH---AEFRQDL 299
           LDEIESMPLA QVK+LRVLQ+  +ER+GSN+ I +DLRVI+AAK +L +      FR+DL
Sbjct: 242 LDEIESMPLAQQVKLLRVLQEKTLERLGSNRSIEVDLRVISAAKPDLLEEVRGGRFREDL 301

Query: 300 FYRLNVAQLYLPPLRERGDDILLLFEHFCVQVKP----TWRSLSEADRLALLTYRWPGNV 355
            YRLNVA+L++PPLRER +DI LLFEHF  Q           ++  +   LL + WPGNV
Sbjct: 302 LYRLNVAELHIPPLRERREDIPLLFEHFASQAAQRHGRAAPPVTPGELTQLLAHDWPGNV 361

Query: 356 RELRNVALRYALDDSISVGEILASCPGMTEEEASAGLPLAIQVHNFERKVIAQALHRHQG 415
           REL N A R+AL        + A  P      +S G  LA Q+  FE + +  AL + +G
Sbjct: 362 RELINAAERHALG-------LSAPAPA-----SSGGQSLAEQMEAFEAQCLHNALQQCKG 409

Query: 416 NISEVMKELDLPRRTLNQKMQKFGLLRGDF 445
           NI+EVM +L LPRRTLN+KMQ+ GL R D+
Sbjct: 410 NITEVMTQLQLPRRTLNEKMQRHGLSRSDY 439