Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  273 bits (698), Expect = 9e-78
 Identities = 172/459 (37%), Positives = 247/459 (53%), Gaps = 42/459 (9%)

Query: 5   RIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDGLS 64
           +I L+EDD  +R+A G  L+L G+         +AL+A++Q  F+ VVSDV +P  DG  
Sbjct: 4   KILLVEDDRALREALGITLELGGYAYRAVDSAEAALSALQQDMFSLVVSDVNMPGMDGHE 63

Query: 65  LLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQYQN 124
           LL  ++     +PV+L+T  G V  AV A+ +GA D++ KPF+P    NT+ + + ++ N
Sbjct: 64  LLALIRKRYPQIPVLLMTAFGAVARAVDAMREGAIDYLVKPFEP----NTLLELLRRHIN 119

Query: 125 ALSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELVAQ 184
                + A    +     Q L+G  +          +VA  D+ V+I+GE+G GKE++A+
Sbjct: 120 GALDAADAEGPVACDASSQQLLGLAR----------RVAQSDSTVLIFGESGTGKEVLAR 169

Query: 185 CLHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLFLD 244
            +HQ S R +  F+AINC AIP+N+ E+ LFGHE GAFTGA+  + GK E AD GTL LD
Sbjct: 170 YIHQQSPRSKRPFIAINCAAIPDNMLEATLFGHEKGAFTGAIASQPGKFEQADGGTLLLD 229

Query: 245 EIESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELRQH---AEFRQDLFY 301
           EI  MPL +Q K+LRVLQ+  VERVG  +PIT+D+RV+A    +L        FR+DL+Y
Sbjct: 230 EISEMPLGLQAKLLRVLQEREVERVGGRRPITLDIRVLATTNRDLVGEVAAGRFREDLYY 289

Query: 302 RLNVAQLYLPPLRERGDDILLLFEHFCV----QVKPTWRSLSEADRLALLTYRWPGNVRE 357
           RL+V  L   PLR+R  DIL L E        +++     LS A +  LL + WPGNVRE
Sbjct: 290 RLSVFPLSWSPLRQRPADILPLAERLLASRARKMRQGSAQLSAAAQRCLLGHPWPGNVRE 349

Query: 358 LRNVALRYAL----------DDSISVGEILASCPG-----------MTEEEASAGLPLAI 396
           L N   R  +          D  +S    +AS P            +TE    +   L  
Sbjct: 350 LDNAIQRALILQQGGLIQPEDLCLSGVSNVASLPTPVAVAQTPSDLITEGPRESCSALGD 409

Query: 397 QVHNFERKVIAQALHRHQGNISEVMKELDLPRRTLNQKM 435
            +   E ++I   L   +G   E    L +  RTL  K+
Sbjct: 410 DLRRREFQLIIDTLRAERGRRKETADRLGISARTLRYKL 448