Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 463 a.a., Helix-turn-helix, Fis-type from Pseudomonas syringae pv. syringae B728a

 Score =  372 bits (955), Expect = e-107
 Identities = 215/448 (47%), Positives = 285/448 (63%), Gaps = 13/448 (2%)

Query: 5   RIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDGLS 64
           ++ LI+DD  +RQA  Q L LAG +V    +       I +     VVSD+R+   DGL 
Sbjct: 12  QVVLIDDDSHLRQALRQTLDLAGLNVLSLPEATGLAERIGRDWPGVVVSDIRMQGMDGLE 71

Query: 65  LLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQYQN 124
           LL  L      +PV+LITGHGDV +AVKA+  GA+DF+EKPF  + + ++V +A++  + 
Sbjct: 72  LLDQLHAQDPDLPVLLITGHGDVPLAVKAMRAGAYDFLEKPFASDAMLDSVRRALALRRL 131

Query: 125 ALSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELVAQ 184
            L ++S    L+  + L   LIGQ   I  LREQI  +A    +V+I GETG GKE+VA+
Sbjct: 132 VLDNRSLRLALSDRQQLSTRLIGQSPPILRLREQIGALAGTRADVLILGETGAGKEVVAR 191

Query: 185 CLHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLFLD 244
            LH  S R+ G FVAIN GA+ E++ ESELFGHE GAFTGA KRRIGK E A+ GTLFLD
Sbjct: 192 ALHDLSNRRSGPFVAINAGALAESVVESELFGHEPGAFTGAQKRRIGKFEFANGGTLFLD 251

Query: 245 EIESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELRQHAE---FRQDLFY 301
           EIESM L +QVK+LR+LQ+ VVER+GSNQ I +D+R+IAA KE+LR  A+   FR DL+Y
Sbjct: 252 EIESMSLDVQVKLLRLLQERVVERMGSNQQIPLDIRIIAATKEDLRHAADQGRFRADLYY 311

Query: 302 RLNVAQLYLPPLRERGDDILLLFEHFCVQVKPTW----RSLSEADRLALLTYRWPGNVRE 357
           RLNVA L +PPLRERG+D L+LFEH+              L    R  LL + WPGNVRE
Sbjct: 312 RLNVASLRIPPLRERGEDALMLFEHYADAASMRHGIPKHELKPGQRALLLRHNWPGNVRE 371

Query: 358 LRNVALRYALDDSISVGEILASCPGMTEEEA-SAGLPLAIQVHNFERKVIAQALHRHQGN 416
           L+N A R+AL       E+     G+  E+A   G  L+ QV +FER +IA  L R   +
Sbjct: 372 LQNAAERFALG-----LELELEPEGVDAEQAPPPGGGLSDQVESFERALIAAELARPHSS 426

Query: 417 ISEVMKELDLPRRTLNQKMQKFGLLRGD 444
           +  + + L +PR+TL+ K++K GL  GD
Sbjct: 427 VRSLAEALGVPRKTLHDKLRKHGLTFGD 454