Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 461 a.a., response regulator receiver protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  348 bits (893), Expect = e-100
 Identities = 202/455 (44%), Positives = 282/455 (61%), Gaps = 13/455 (2%)

Query: 5   RIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDGLS 64
           ++ +++D+  +     Q  +L G +     D   A++ I++     V++DV +P  DG+S
Sbjct: 10  QVLIVDDEPHIGTVLMQLFELNGLNAEATTDPHLAISLIDRDWPGVVITDVNMPGMDGIS 69

Query: 65  LLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQYQN 124
           LL     + + +PV+L+TG GD+ MAV AL QGA+DF+EKPF  E + + V +A+ +   
Sbjct: 70  LLAQCIRIDADLPVVLLTGFGDIAMAVSALKQGAYDFLEKPFNNEHMLDVVKRALEKRSL 129

Query: 125 ALSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELVAQ 184
            L ++     L S       ++G    I  LR  I  V     +V+I GETG GKELVA+
Sbjct: 130 TLENRKLKKQLESHAIPGPRILGNSPGIVRLRNLIDMVVNTPADVLIEGETGTGKELVAR 189

Query: 185 CLHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLFLD 244
           CLH  S R +  FVAINCGAIPENL ESELFG EAGAFTG  K R+GK E A+ GTLFLD
Sbjct: 190 CLHDHSPRHQANFVAINCGAIPENLIESELFGAEAGAFTGIDKARVGKFEFANGGTLFLD 249

Query: 245 EIESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELRQ---HAEFRQDLFY 301
           EIES PL++QVK+LRVL+D  VER+GSN+ I +D+RV+AA K +L+Q     EFRQDL Y
Sbjct: 250 EIESTPLSLQVKLLRVLEDRKVERLGSNKSIPLDIRVVAATKVDLKQLCDKGEFRQDLLY 309

Query: 302 RLNVAQLYLPPLRERGDDILLLFEHFCVQVKPTWRS---LSEADRLALLT-YRWPGNVRE 357
           RLN+  + +PPL+ER +DI LLF HF       +        A+  A +T + WPGNVRE
Sbjct: 310 RLNLVTIPIPPLKERREDIPLLFLHFARIASARYHKELIFPSAEHHARMTAHDWPGNVRE 369

Query: 358 LRNVALRYALDDSISVGEILASCPGMTEEEASAGLPLAIQVHNFERKVIAQALHRHQGNI 417
           LRN+A RY L  + S     AS  G    +  +G+ L+ +V  FER +I +AL  ++G+I
Sbjct: 370 LRNLAERYVLLGAESA--FAASLGG--HAQLQSGMSLSQRVEFFERMLIEEALSHNRGSI 425

Query: 418 SEVMKELDLPRRTLNQKMQKFGLLRGDF--TAQEE 450
            + M++L+LPR+TL  KM+K+ L R  +    QEE
Sbjct: 426 KQTMEQLELPRKTLYDKMRKYDLDRKHYLNDTQEE 460