Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) from Rhodospirillum rubrum S1H

 Score =  285 bits (730), Expect = 2e-81
 Identities = 180/457 (39%), Positives = 243/457 (53%), Gaps = 21/457 (4%)

Query: 3   SQRIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDG 62
           +Q + +++DD+ +RQ    +L   G  V    DG  A+     Q    V+ D+R+P  +G
Sbjct: 5   AQTVLIVDDDEAIRQMLSAFLSKEGLRVVTARDGLEAIEVFRLQRTDVVLLDIRMPRMNG 64

Query: 63  LSLLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQY 122
           L    A+  +     VIL+T   +V  AV+A+  GAFD++ KPF  E +   V +A+   
Sbjct: 65  LEAAKAILEMDRGTAVILMTAFAEVCTAVQAIKDGAFDYVIKPFDLEEIRLLVRRALEIR 124

Query: 123 QNALSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELV 182
                  S    L+   G E IL    K + L R+ IAKVA     V+I GE+G GKELV
Sbjct: 125 SMRADIVSLRRELSERYGAEGILTDNPKMMDL-RQTIAKVARSQATVLIQGESGTGKELV 183

Query: 183 AQCLHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLF 242
           A  +H  S R  G F+ +NC AIPE L ESE FGHE GAFTGA  RR G+ E A+ GTLF
Sbjct: 184 AASVHYGSPRATGPFIRVNCAAIPEGLLESEFFGHEKGAFTGAATRRRGRFEQAEHGTLF 243

Query: 243 LDEIESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELR---QHAEFRQDL 299
           LDEI  +  A+QVK+LRVLQ+   ERVG ++PI  D+R++AA   +L    +   FRQDL
Sbjct: 244 LDEIGEISPALQVKLLRVLQEREYERVGGSEPIPADVRIVAATNRDLEAMIREGTFRQDL 303

Query: 300 FYRLNVAQLYLPPLRERGDDILLLFEH----FCVQVKPTWRSLSEADRLALLTYRWPGNV 355
           F+RLNV  L   PLR+R +DI LL +H    F        R    A    +L Y WPGNV
Sbjct: 304 FFRLNVVALKTIPLRDRPEDIRLLADHFLGRFAADNNVVIRGFDPAALDCMLAYPWPGNV 363

Query: 356 REL------------RNVALRYALDDSISVGEILASCPGMTEEEASAGLPLAIQVHNFER 403
           REL             NV LR  L ++I  GE  A    +   +  A  PL      FE 
Sbjct: 364 RELVNAVERAVVMSTGNVILRDDLPENIICGERAAFVSELL-PDGEAIRPLREMASEFET 422

Query: 404 KVIAQALHRHQGNISEVMKELDLPRRTLNQKMQKFGL 440
           +VI  AL R+ GN +    +L + RR L  K+Q++ +
Sbjct: 423 RVIRLALARNGGNRARTAIQLGISRRALLYKLQEYAI 459