Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., C4-dicarboxylate transport transcriptional regulatory protein DctD from Phaeobacter inhibens DSM 17395

 Score =  273 bits (697), Expect = 1e-77
 Identities = 166/455 (36%), Positives = 245/455 (53%), Gaps = 25/455 (5%)

Query: 2   ESQRIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTD 61
           ++ +IA+++D+  +RQ+  QWL L+G+D   FA    AL  +       V+SD+++P  D
Sbjct: 3   QAMKIAIVDDEQDMRQSISQWLALSGYDTETFASAEDALKVLGPDYPGIVISDIKMPGMD 62

Query: 62  GLSLLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQ 121
           G+  L  L    S +PVI+ITGHGDV MAV+A+  GAFDF+EKPF P+R++    +A   
Sbjct: 63  GMQFLKKLMGSDSALPVIMITGHGDVPMAVEAMRVGAFDFLEKPFNPDRMSELAKRATGA 122

Query: 122 YQNALSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKEL 181
            +  L ++     L+    + + LIG    ++ LRE I  +   D +V+I GETG GK L
Sbjct: 123 RRLTLDNRVLRRELSDGSTIMKKLIGSSPVMERLREDILDLGQADGHVLIDGETGTGKTL 182

Query: 182 VAQCLHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTL 241
           VA  LH    R   +FV ++C A+ E      LFG             +  +E A  GTL
Sbjct: 183 VAHALHAVGSRAGKKFVLVSCAALEEEALSKRLFGPML-----PEDSMLPAIEEARGGTL 237

Query: 242 FLDEIESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAK-EELRQHAE--FRQD 298
            L++I+++   +Q K+L V+ +         Q I  + R++A +  +E  +  E   R D
Sbjct: 238 VLEDIDALSETLQAKLLSVINE---------QGIPGETRIVAISNLQEAGKTCEDALRPD 288

Query: 299 LFYRLNVAQLYLPPLRERGDDILLLF----EHFCVQVKPTWRSLSEADRLALLTYRWPGN 354
           LFYRL   ++ +PPLR+RG+DIL LF    E F  +       +S  +   LL   WPGN
Sbjct: 289 LFYRLAALRITVPPLRQRGEDILTLFTRLSEQFSEEYGCDAPQVSAQEAAQLLQAPWPGN 348

Query: 355 VRELRNVALRYALDDSISVGEI----LASCPGMTEEEASAGLPLAIQVHNFERKVIAQAL 410
           VR+L N+A R  L      G I    ++    M     + G PL   V  FER +I   +
Sbjct: 349 VRQLINIAERAVLQSRRGSGTIASLLMSDHEDMQPVMTTEGKPLKEYVEAFERMLIDNTM 408

Query: 411 HRHQGNISEVMKELDLPRRTLNQKMQKFGLLRGDF 445
            RH+G+I+ VM EL LPRRTLN+KM K+GL R D+
Sbjct: 409 RRHKGSIASVMDELCLPRRTLNEKMAKYGLQRSDY 443