Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Dechlorosoma suillum PS

 Score =  363 bits (933), Expect = e-105
 Identities = 211/451 (46%), Positives = 277/451 (61%), Gaps = 24/451 (5%)

Query: 6   IALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDGLSL 65
           + L+EDD  VR  + Q L LAG +V  FAD   ALAA+  +   AVVSDVRLP  DG++L
Sbjct: 9   VFLVEDDPAVRMGSAQALTLAGLEVRSFADAEGALAALAAELPGAVVSDVRLPGRDGIAL 68

Query: 66  LVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQYQNA 125
           L  L+ +   +PVIL+TGHGDV MAV+A+  GA DFIEKPF  E L     QA+ +    
Sbjct: 69  LGELRQLDRELPVILVTGHGDVAMAVQAMRDGAHDFIEKPFTSEHLVRVTRQALEKRALL 128

Query: 126 LSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELVAQC 185
           L ++     L +  GL   +IGQ  ++Q +R  +A +A  D +++I GETG GKE+VA+ 
Sbjct: 129 LENRRLKEALPTQDGLP--VIGQTPAMQEVRRLVAALAPTDVDILINGETGSGKEVVARA 186

Query: 186 LHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLFLDE 245
           +H AS R RG FVAINC A+PE++FESE+FGHEAGAFTGA KRRIGK+E A  GTLFLDE
Sbjct: 187 IHSASGR-RGPFVAINCAALPESVFESEMFGHEAGAFTGAGKRRIGKIEYAHGGTLFLDE 245

Query: 246 IESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELR---QHAEFRQDLFYR 302
           IESMPL +QVK+LR LQ+  +ER+G N P+ +D RV+AA+K +L+   +  +FR DL+YR
Sbjct: 246 IESMPLNLQVKLLRALQERSIERLGGNAPVAVDCRVVAASKADLKALSEAGQFRADLYYR 305

Query: 303 LNVAQLYLPPLRERGDDILLLFEHFCVQVK-------PTWRSLSEADRLALLTYRWPGNV 355
           LNV  + LPPLR R +DI LL  HF  Q         P W     A+        WPGNV
Sbjct: 306 LNVVSIDLPPLRRRQEDIPLLMGHFLQQAAKRFGREVPAW---GPAELARWQAQPWPGNV 362

Query: 356 RELRNVALRYALD-DSISVGEILASCPGMTEEEASAGLPLAIQVHNFERKVIAQALHRHQ 414
           REL+N A R+ L  D         S PG       A LPLA ++   E+  I  AL    
Sbjct: 363 RELKNAAERFCLGLDQPQAASPAGSAPG-------AELPLARRLELAEQGFIEAALAACH 415

Query: 415 GNISEVMKELDLPRRTLNQKMQKFGLLRGDF 445
           GN++   + L LP++TL  K+ +  +    F
Sbjct: 416 GNVALAAERLQLPKKTLYDKLARLQIAADTF 446