Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 474 a.a., response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Dechlorosoma suillum PS

 Score =  279 bits (714), Expect = 1e-79
 Identities = 179/478 (37%), Positives = 260/478 (54%), Gaps = 59/478 (12%)

Query: 6   IALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDGLSL 65
           I ++EDD  +R+A    L+LAG  V   A G  AL  + ++  A VVSDVR+   DG++L
Sbjct: 7   ILVVEDDPNLREAVVDTLELAGEAVLSAASGPEALKVLAERPVAIVVSDVRMEPMDGITL 66

Query: 66  LVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQYQNA 125
           L  ++     +PV+L+T   DVD AV+A+  GA DF+ KPF+P+ L   VA+        
Sbjct: 67  LKEIRGQYPHLPVVLMTAFADVDRAVEAMRAGACDFLLKPFEPKALLEHVAR-------- 118

Query: 126 LSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELVAQC 185
                   Y   A G +  ++    + + L    A+VA  D  V++ GE+G GKE+VA+ 
Sbjct: 119 --------YRLPAMGEDSDVVAVDAASRNLFSLAARVAQTDATVLLTGESGVGKEVVARY 170

Query: 186 LHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLFLDE 245
           +H  S R++G FVAINC AIPE+L E+ LFG+E GAFTGA + + GK E A  GTL LDE
Sbjct: 171 IHNHSARRKGPFVAINCAAIPESLLEATLFGYEKGAFTGANQAQAGKFEQAQNGTLLLDE 230

Query: 246 IESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELRQHAE---FRQDLFYR 302
           +  MPLA+Q K+LRVLQ+  VERVG  QP+ +D+RV+A +  ++ +      FR+DL+YR
Sbjct: 231 VTEMPLALQAKLLRVLQEREVERVGGKQPVRLDIRVVATSNRDMAEAVAKGIFREDLYYR 290

Query: 303 LNVAQLYLPPLRERGDDILLLFEHFCV-QVKPTWRS---LSEADRLALLTYRWPGNVREL 358
           LNV  L +P LR+R DD++ L  HF   Q   + R    L+ A   AL  + WPGNVREL
Sbjct: 291 LNVFPLLIPALRQRPDDVVPLARHFLADQGGKSGRPGLLLTPAAEQALRVHSWPGNVREL 350

Query: 359 RNV---ALRYALDDSISVGEI-LASCPGMTEEEASAGLP--------------------- 393
            NV   AL  A  D +    + L + PG     A A +P                     
Sbjct: 351 VNVMQRALILAPGDQVDAAHLHLVARPGAPAAAAPAYVPPPPVMMEVPQLAPQAPQAISV 410

Query: 394 -----------LAIQVHNFERKVIAQALHRHQGNISEVMKELDLPRRTLNQKMQKFGL 440
                       A  + ++ER++I + L    G+    +++L +  RTL  K++++ L
Sbjct: 411 EEDGALQSGGKKADSIKDWERELILETLASVGGSRKLAVEKLGISERTLRHKLRQYRL 468