Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  276 bits (706), Expect = 1e-78
 Identities = 179/476 (37%), Positives = 258/476 (54%), Gaps = 36/476 (7%)

Query: 1   MESQRIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDT 60
           M +  I +++DD   R      L+  G+      DG SA+A + Q+++ AV+ DVR+   
Sbjct: 1   MSTATILIVDDDAAHRSMLRTMLRGWGYATEEADDGESAVAKVRQRAWDAVLMDVRMARM 60

Query: 61  DGLSLLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVS 120
           DG++ L  + +     PV+++T    VD AV+AL  GA+D++ KP   + L +T+ +A+ 
Sbjct: 61  DGIAALRHILDWNPATPVLIMTAFSSVDTAVEALRTGAYDYLIKPLDFDVLRHTLERALD 120

Query: 121 QYQNALSSQSRAHYLAS-----AKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGET 175
             + A  ++     L+S     A G    +IG+   +  L E IA VA  +  V+I GE+
Sbjct: 121 HTRLASENRELRERLSSQGGAGAPGASHGIIGRSAPMHELVEMIATVAPSEATVLITGES 180

Query: 176 GCGKELVAQCLHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLEL 235
           G GKELVA+ LH AS R     V +NC A+ E L ESELFGHE GAFTGA +RR G+   
Sbjct: 181 GTGKELVARALHAASHRSAKPLVTVNCAALTETLLESELFGHERGAFTGADRRREGRFVQ 240

Query: 236 ADKGTLFLDEIESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELRQHA-- 293
           AD GTLFLDEI  MPL +Q K+LR LQ   V+RVGS+ P+T+D+RVIAA   +LR+ A  
Sbjct: 241 ADGGTLFLDEIGEMPLTLQAKLLRALQQGEVQRVGSDTPLTVDVRVIAATNRDLREEAAA 300

Query: 294 -EFRQDLFYRLNVAQLYLPPLRERGDDILLL----FEHFCVQVKPTWRSLSEADRLALLT 348
             FR+DL+YRLNV  +++P LRER  D+ LL     + +  + +   +  +      LL 
Sbjct: 301 GRFREDLYYRLNVIAVHVPALRERAGDVPLLAAFFLDRYTEKNRKHLKGFTPQAMDMLLR 360

Query: 349 YRWPGNVRELRNV---ALRYALDDSISVGE-----------ILASCPGMTEEEASAG--- 391
           + WPGNVREL N    A+  A  D ++  E           I  S       EA AG   
Sbjct: 361 HDWPGNVRELENAIERAVILATGDYVTERELPLHFGGGGSGIAGSGGSAGTGEAGAGNAP 420

Query: 392 ------LPLA-IQVHNFERKVIAQALHRHQGNISEVMKELDLPRRTLNQKMQKFGL 440
                  P A + + + ER+ I   L     N SE  + L + R TL+ K++K+ L
Sbjct: 421 ADGDGLAPYAGLSLEDLERRAIIATLRETADNKSEAARRLGITRATLHNKLKKYDL 476