Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  269 bits (687), Expect = 2e-76
 Identities = 176/456 (38%), Positives = 248/456 (54%), Gaps = 22/456 (4%)

Query: 1   MESQRIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDT 60
           M    + L+ED+  +       L  AG++VA   D   A   + Q+ F  V++D+RLP  
Sbjct: 1   MTKHSVLLVEDELSMLLGMQHALSQAGYEVATAGDAEKAQQLLRQRPFDLVITDLRLPGM 60

Query: 61  DGLSLLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVS 120
           +G+ LL  +  +     VILIT   +V++AV+A+  GAFDF+ KPF  + L      AV 
Sbjct: 61  NGMELLEGICELYPGTGVILITAFPEVELAVQAIKAGAFDFLCKPFPRDGLLI----AVE 116

Query: 121 QYQNALSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKE 180
           +Y   L  +     L   +  +   IG+   +  + E+I  +A     V++ G +G GKE
Sbjct: 117 RYFRFLDLKRENARLRGERD-DGEFIGESPMMLKVFERIRAIAGSCVPVLVLGPSGSGKE 175

Query: 181 LVAQCLHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGT 240
           LVA  LH+ S+R+   F+ INC A+PE+L ESELFGHE GAFTGA + R GK E AD GT
Sbjct: 176 LVAGALHRLSKRRDKPFIKINCAALPEHLLESELFGHEKGAFTGAQQARKGKFEAADGGT 235

Query: 241 LFLDEIESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELRQ---HAEFRQ 297
           LF DE   MPLA+Q K+LRVL+D  V  VG N P  +D+R + A   +L +      FR+
Sbjct: 236 LFFDEAGEMPLAVQAKLLRVLEDQEVTPVGGNMPRKVDVRTVFATARDLEEAIGAGTFRE 295

Query: 298 DLFYRLNVAQLYLPPLRERGDDILLLFE----HFCVQVKPTWRSLSEADRLALLTYRWPG 353
           DL+YR+NV  + LPPLRERG D+ LL E     FC Q      + SE  R ALL Y +PG
Sbjct: 296 DLYYRINVVPVTLPPLRERGGDVALLAERFLRRFCAQ-HDRQVTFSEQARNALLAYDYPG 354

Query: 354 NVRELRNVALRYAL---DDSISVGEILASCPGMT------EEEASAGLPLAIQVHNFERK 404
           NVRELRN   R  +   +D I VG +       T      + E +  + LA  V  FE+K
Sbjct: 355 NVRELRNAIERAVILCAEDKIHVGHLPKRIRDATQASQEQQPEETRFVQLADGVAQFEKK 414

Query: 405 VIAQALHRHQGNISEVMKELDLPRRTLNQKMQKFGL 440
            I +AL +  G      + L + R+ L  K+++  +
Sbjct: 415 RILEALQKTGGRRIRAAELLGITRKQLWLKLKELDI 450