Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 462 a.a., two component, sigma54 specific, transcriptional regulator, Fis family from Marinobacter adhaerens HP15

 Score =  264 bits (674), Expect = 5e-75
 Identities = 168/463 (36%), Positives = 249/463 (53%), Gaps = 39/463 (8%)

Query: 8   LIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDGLSLLV 67
           +++D+  +R+     L   G       D  SA   +EQ +    ++D+ LPD +G+ L+ 
Sbjct: 8   IVDDEPDIRELLEITLTRMGITTLTAPDLTSAQKLLEQNTTHLCLTDMNLPDGNGIELVQ 67

Query: 68  ALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQYQNALS 127
            ++      PV +IT +G++D A+++L  GAFDF+ KP +  RL   V  A+   +    
Sbjct: 68  WIQKHSPATPVAVITAYGNMDTAIESLKAGAFDFVSKPVELPRLRELVNSALKLAE---- 123

Query: 128 SQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELVAQCLH 187
            ++ A   A   GL   L+G+   I+ LR Q  K+A     V I GE+G GKELVA+ +H
Sbjct: 124 PKADAEDTADEPGL---LLGKSPEIRKLRNQTRKLARSQAPVFISGESGSGKELVARMIH 180

Query: 188 QASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLFLDEIE 247
               R+ G F+A+NCGAIP  L ESE FGH+ G+FTGAV+ + G    A+ GTLFLDE+ 
Sbjct: 181 LQGPRREGPFIAVNCGAIPSELMESEFFGHKKGSFTGAVENKDGLFRSANGGTLFLDEVA 240

Query: 248 SMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKE---ELRQHAEFRQDLFYRLN 304
            +PLAMQVK+LR +Q+  V  VG  + + +D+RV++A  +   EL Q   FRQDLFYR+N
Sbjct: 241 DLPLAMQVKLLRAIQEKAVRPVGDTKEVPVDIRVLSATHKNLPELVQEGSFRQDLFYRIN 300

Query: 305 VAQLYLPPLRERGDDILLLFEHFCVQVKPTWR----SLSEADRLALLTYRWPGNVRELRN 360
           V +L +PPLRER DDI LL  H   ++   +     SL+ A    L +Y +PGNVREL N
Sbjct: 301 VIELSVPPLRERPDDISLLSNHILERIAKEYECDPASLTPAAVDRLRSYDFPGNVRELEN 360

Query: 361 VALR-YALDD-----------------SISVGEILASCPGMTEEEASAGLP-----LAIQ 397
           V  R + L D                 + S  +I+A   G   +     +P     L   
Sbjct: 361 VLERAFTLCDADQIDADDLHLGNGVQHAASASQIIAE--GQVGDGEGIAVPDGEIDLEGY 418

Query: 398 VHNFERKVIAQALHRHQGNISEVMKELDLPRRTLNQKMQKFGL 440
           +   ER+ I +AL   + N +   K L +  R L  +++K G+
Sbjct: 419 LEKIERQAIEKALEATRWNKTAAAKRLGISFRALRYRLKKLGM 461