Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., nitrogen assimilation regulatory protein from Klebsiella michiganensis M5al

 Score =  269 bits (688), Expect = 1e-76
 Identities = 168/467 (35%), Positives = 246/467 (52%), Gaps = 40/467 (8%)

Query: 8   LIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDGLSLLV 67
           +++DD  +R    + L  AG     F  G   L A+  ++   ++SD+R+P  DGL+LL 
Sbjct: 8   IVDDDSSIRWVLERALTGAGLSCTTFESGNEVLDALTTKTPDVLLSDIRMPGMDGLALLK 67

Query: 68  ALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQYQNALS 127
            +K    ++PVI++T H D+D AV A  QGAFD++ KPF  +     V +A+S YQ    
Sbjct: 68  QIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVDRAISHYQEQQQ 127

Query: 128 SQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELVAQCLH 187
            ++      +A      +IG+  ++Q +   I +++    +V+I GE+G GKELVA  LH
Sbjct: 128 PRNAPINSPTAD-----IIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALH 182

Query: 188 QASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLFLDEIE 247
           + S R +  F+A+N  AIP++L ESELFGHE GAFTGA   R G+ E AD GTLFLDEI 
Sbjct: 183 RHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTVRQGRFEQADGGTLFLDEIG 242

Query: 248 SMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELR---QHAEFRQDLFYRLN 304
            MPL +Q ++LRVL D    RVG   P+ +D+R+IAA  + L    Q  +FR+DLF+RLN
Sbjct: 243 DMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLELRVQEGKFREDLFHRLN 302

Query: 305 VAQLYLPPLRERGDDILLLFEHF----CVQVKPTWRSLSEADRLALLTYRWPGNVRELRN 360
           V +++LPPLRER +DI  L  HF      ++    + L     +AL    WPGNVR+L N
Sbjct: 303 VIRVHLPPLRERREDIPRLARHFLQIAARELGVEAKQLHPETEMALTRLAWPGNVRQLEN 362

Query: 361 VALRYALDDSISVGEILASCPGMTEEEASAGLP--------------------------- 393
              R+    +     +    P    E A    P                           
Sbjct: 363 TC-RWLTVMAAGQEVLTQDLPSELFETAIPDNPTQMLPDSWATLLGQWADRALRSGHQNL 421

Query: 394 LAIQVHNFERKVIAQALHRHQGNISEVMKELDLPRRTLNQKMQKFGL 440
           L+      ER ++  AL   QG+  E  + L   R TL +K+++ G+
Sbjct: 422 LSEAQPEMERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468