Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  274 bits (700), Expect = 5e-78
 Identities = 175/457 (38%), Positives = 251/457 (54%), Gaps = 22/457 (4%)

Query: 1   MESQRIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDT 60
           M    I L+ED+  +R      L  AG++VA      +A  A+ ++ F  V++D+RLP  
Sbjct: 1   MTPHSILLVEDELSMRLGMQHALSRAGYEVAAADTAEAARHALHRRPFDLVITDLRLPGM 60

Query: 61  DGLSLLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVS 120
            G+ LL +++ +     VILIT   +V++AV+A+  GAFDF+ KPFQ + L      AV 
Sbjct: 61  SGMELLDSIREMHPGTGVILITAFPEVELAVQAIKAGAFDFLCKPFQSDGLLI----AVE 116

Query: 121 QYQNALSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKE 180
           ++   L  +     L   +  E   IG+  ++  + ++I  +A     V++ G +G GKE
Sbjct: 117 RFFRFLDLKRENDRLRGERE-EGEFIGESPAMLKVFDRIRALADACVPVLVLGPSGSGKE 175

Query: 181 LVAQCLHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGT 240
           LVA  LH+ S+R+   F+ INC A+PE L ESELFGHE GAFTGA + RIGK E AD GT
Sbjct: 176 LVAGALHRRSKRRDRPFIKINCAALPEQLLESELFGHEKGAFTGAQQARIGKFEAADGGT 235

Query: 241 LFLDEIESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELRQ---HAEFRQ 297
           LF DE+  MPL +Q K+LRVL+D  V  VG N P  +++R + A    L +      FR+
Sbjct: 236 LFFDEVGEMPLPLQAKLLRVLEDQEVTPVGGNTPRKVNVRTVFATARNLEEAIADGRFRE 295

Query: 298 DLFYRLNVAQLYLPPLRERGDDILLLFEHFC---VQVKPTWRSLSEADRLALLTYRWPGN 354
           DL+YR+NV  + LPPLRERG D+ LL E F      +     +LSE  RLALL Y +PGN
Sbjct: 296 DLYYRINVVPVTLPPLRERGSDVALLTERFLRRFCALHERQATLSEQARLALLAYDYPGN 355

Query: 355 VRELRNV---ALRYALDDSISVGEI--------LASCPGMTEEEASAGLPLAIQVHNFER 403
           VRELRN    A+    +  I VG +         +  P   ++       LA  V  FER
Sbjct: 356 VRELRNAVEHAVLLCTEGEIHVGHLPERIRAATQSMPPACDDDAGDTPASLAEGVARFER 415

Query: 404 KVIAQALHRHQGNISEVMKELDLPRRTLNQKMQKFGL 440
           + I +AL R  G   +    L + R+ L  K+++  +
Sbjct: 416 RRIMEALERTGGRKIQAADLLGISRKQLWLKLKELSI 452