Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 472 a.a., sigma-54 dependent transcriptional regulator/response regulator (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  297 bits (760), Expect = 6e-85
 Identities = 179/469 (38%), Positives = 264/469 (56%), Gaps = 30/469 (6%)

Query: 5   RIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDGLS 64
           RI +I+D+D +R +    L+  G +V    DG + L  +   +   V  D+ +P  DGL+
Sbjct: 4   RILIIDDEDDIRFSLRGILEDEGHEVTEAPDGEAGLRTLASDTPDVVFLDIWMPGMDGLT 63

Query: 65  LLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQYQN 124
           +L  +      +PVI+I+GHG ++ AV A+ +GA DFIEKP   E++     +A+   + 
Sbjct: 64  VLEHIHAAAPSLPVIMISGHGTIETAVAAIKKGAHDFIEKPLSLEKVVIAAERALEMREL 123

Query: 125 ALSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELVAQ 184
              +Q+    L +    ++ LIG+   ++ +REQIA+VA  D  V+I GE G GKEL A+
Sbjct: 124 RRENQALRSSLGAGSKADE-LIGESAPMRRIREQIARVAPTDAWVLITGENGTGKELAAR 182

Query: 185 CLHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLFLD 244
            +H  S+R     VA+NC AIPE L ESELFGHE GAFTGA   R GK E+A +GTLFLD
Sbjct: 183 AVHAGSQRATRPLVAVNCAAIPEELIESELFGHEKGAFTGAESARTGKFEMAHRGTLFLD 242

Query: 245 EIESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELRQ---HAEFRQDLFY 301
           EI  M L  Q K+LR+LQ+   E+VG  + I +D+RV+AA  + L +      FR+DL+Y
Sbjct: 243 EIGDMSLKTQAKILRILQEQSFEKVGGTRTIRVDVRVVAATNKNLEEQIAQGTFREDLYY 302

Query: 302 RLNVAQLYLPPLRERGDDILLLFEHFCVQV--KPTWRSLSEAD--RLALLTYRWPGNVRE 357
           RL V  L LP LRERGDDIL L + F +++     +  L+  D  +  LL YRWPGNVRE
Sbjct: 303 RLRVFPLSLPALRERGDDILRLLDAFMLRLCRDHAFAPLTFTDDAQDVLLRYRWPGNVRE 362

Query: 358 LRNVALRYAL---DDSISVGEILASC-----------PGMTEEEASAG--------LPLA 395
           LRN   R  +    +S+ V ++   C            G   + A+A         L   
Sbjct: 363 LRNFVERMLILHAGESVDVEDLPPECLRDLSPSSDSATGTAAQSATATCGTGVDGILDFK 422

Query: 396 IQVHNFERKVIAQALHRHQGNISEVMKELDLPRRTLNQKMQKFGLLRGD 444
              + FE + +A+ L    GN+S + + + L R  L++K++ +G++ GD
Sbjct: 423 AARNAFETRFLAEQLQECGGNVSRLAERIGLERSHLHRKLKGYGIIAGD 471