Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  338 bits (866), Expect = 3e-97
 Identities = 194/458 (42%), Positives = 273/458 (59%), Gaps = 13/458 (2%)

Query: 1   MESQRIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDT 60
           ++   + +I+D+  +     Q  +L G       D       +++     V+SDV +P  
Sbjct: 7   IQDYSVLIIDDEPHIGTVLVQLFELEGIKAFATTDPKGIAKLLDRDWAGVVISDVNMPQL 66

Query: 61  DGLSLLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVS 120
           DG+SL+  ++     +PV+L+TG GD+ MAV AL QGA+DF+EKPF  E + + V +A+ 
Sbjct: 67  DGISLMQQIRQQDPDLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNEHMLDVVKRALD 126

Query: 121 QYQNALSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKE 180
           +    L ++     L S       ++G    I  +R  I +V     +V+I GETG GKE
Sbjct: 127 KRSLTLENRKLKKELESHNVPGPRILGHSVGILRMRHIIDQVIDTPADVLIEGETGTGKE 186

Query: 181 LVAQCLHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGT 240
           LVA+ LH  S R +  FVAINCGAIPENL ESELFG EAGAFTG  K RIGK E A+ GT
Sbjct: 187 LVARYLHDHSSRNQANFVAINCGAIPENLIESELFGAEAGAFTGVDKLRIGKFEYANGGT 246

Query: 241 LFLDEIESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELR---QHAEFRQ 297
           LFLDEIES PL++QVK+LRVL+D  VER+GSN+ I +D+RVIAA K +L+      EFRQ
Sbjct: 247 LFLDEIESTPLSLQVKLLRVLEDRKVERLGSNKSIHLDIRVIAATKVDLKSLCDTGEFRQ 306

Query: 298 DLFYRLNVAQLYLPPLRERGDDILLLFEHFCVQVKPTWR----SLSEADRLALLTYRWPG 353
           DL YRLN+  + +PPLR+R +DI LLF HF       +     +L+      L ++ WPG
Sbjct: 307 DLLYRLNLVTVPIPPLRDRREDIPLLFLHFARMASARYHKALIALNAEQNAILTSHDWPG 366

Query: 354 NVRELRNVALRYA-LDDSISVGEILASCPGMTEEEASAGLPLAIQVHNFERKVIAQALHR 412
           NVRELRN+A RY  L    +    L + P +        + L  +V  FER +I +AL  
Sbjct: 367 NVRELRNLAERYVLLGGEAAFAGSLGNAPSL-----HTSMSLLQRVEFFERVLIEEALSH 421

Query: 413 HQGNISEVMKELDLPRRTLNQKMQKFGLLRGDFTAQEE 450
           ++G+I + M++L+LPR+TL  KM+K+ L R  +   +E
Sbjct: 422 NKGSIKQTMEQLELPRKTLYDKMRKYDLDRKQYINADE 459