Pairwise Alignments

Query, 684 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., Signal transduction histidine kinase regulating C4-dicarboxylate transport system (EC 2.7.13.3) from Pseudomonas fluorescens FW300-N2E2

 Score =  184 bits (466), Expect = 1e-50
 Identities = 130/363 (35%), Positives = 189/363 (52%), Gaps = 45/363 (12%)

Query: 338 MAKRYFSLSDSMVRQLQAWSLFDTGNPNATVPLLLKNLTEHQELADITNVETVARR---S 394
           M K  F  +  +V   +A S      P +  P     LT  ++L          RR   +
Sbjct: 270 MEKLTFPANSELVSDERAISYLSQTRPLSDTPWNFTLLTPLEDL----------RRQAIN 319

Query: 395 DGSLFPVLFSLIA---VSWKDRRHYLVTLIDISKRKKAEIALQNANRDLQQRVEERTAAL 451
            G L  V F+L+A   ++W +RR  + T      R  A  ALQ AN  L++R+ ERT  L
Sbjct: 320 QGILVAVAFALVAFLLIAWNERRKVIAT------RLAAREALQQANNQLERRITERTTDL 373

Query: 452 KS---------------------AQQELIEASKMAALGRMSSAITHELNQPLTGLRTLLS 490
           ++                     AQ EL++A K+AA+G+MS++I HELNQPL  LRTL  
Sbjct: 374 RASNERLKGQIRERRQAEETLRRAQDELVQAGKLAAIGQMSTSIAHELNQPLAALRTLSG 433

Query: 491 SNELLLERGETQLLKANTKLVHSLIDRMAAMTSQLKSFAFNRPDALQAISLPDALQEILR 550
           +    LERG+  +  AN K ++ LIDRM  +T+ L+SFA    D  QA SL + ++  L+
Sbjct: 434 NTVRFLERGQLDIASANLKTINDLIDRMGRITASLRSFARRGDDQGQA-SLGNGVEAALQ 492

Query: 551 IHQARLTPVDVRVRLSSDLPLVMGEEQRLRQVLGNLVSNALDAMSQTLEPKLSISAVSEE 610
           +  ARL  +++++  S D   V  ++ RL Q+L NL+ NALDAM    EP+L +   + +
Sbjct: 493 LLGARLESLNIQIHSSFDDVQVQIDQTRLEQILVNLIGNALDAMQTQPEPQLWLEGQAGD 552

Query: 611 DQVIVRVSDNGCGIAPELLTTMFEPFQTSKKMGEGLGLGLAIVANSLRDMQGSIVATNNP 670
            +  +RV DNG GI PE    +FEPF T+K   +GLGLGL + A SL    G  +   +P
Sbjct: 553 GKYRLRVRDNGHGIDPEARKHLFEPFFTTKPGEQGLGLGLTLSA-SLAAATGGYLGVEHP 611

Query: 671 DAG 673
             G
Sbjct: 612 VEG 614



 Score = 67.8 bits (164), Expect = 2e-15
 Identities = 78/314 (24%), Positives = 139/314 (44%), Gaps = 45/314 (14%)

Query: 11  LVILLLIAVRWGSHAVSENWQLRQAQRHGEQRLLDYISDVRRTLSRFYHLPYLMTNEANT 70
           LVI L+I + +    +SE++ +R    +GE++L  +   V   +S++ +LP L+  E++ 
Sbjct: 30  LVIALMIGLGYLGFWISEHYGVRGLAENGERQLELHARAVESEISKYTYLPSLLELESSV 89

Query: 71  LKLFQGDDRPQAQ--LQQQLAQLDKAANTKGWYILTLSGSLLTASKNAENWKLSDG---- 124
            +L   D  P+ +  + + L  L++ + ++  Y++  +G ++  S    NW+  D     
Sbjct: 90  SQLLD-DPTPEHRKIVNEYLEGLNRRSRSRAIYVMDTTGRVMATS----NWRDVDSYLGE 144

Query: 125 ----KAIIHKILQQREGISIVTKSVGSTPTYFVAAPVYLDVEIVGAVAVQVDLNVLADQW 180
               +A     ++ + G      S    P Y++A  +    +I+G   V+V L  L ++W
Sbjct: 145 DLSFRAYFQNAVRGQPGRFYGIGSTNGEPGYYLAHGLEQQGKIIGVAVVKVRLEALEERW 204

Query: 181 -------FASDEL-ILFQNSQRHYFLSSSSVYSAD------------WIATHPEVVAAAQ 220
                  F SDE  I+  +S     L S    S D            W   + E+V  A+
Sbjct: 205 QRARLEAFVSDENGIIILSSDPARRLKSVRPLSDDTKERLARSLQYYWFPLN-ELVPLAR 263

Query: 221 KRSLFDGTRLT------LWQVEQA-PYLAQSVTLDDLNWTLTYLTPLKNLNATVNWISTS 273
           +R      +LT      L   E+A  YL+Q+  L D  W  T LTPL++L      I+  
Sbjct: 264 ERLAEGMEKLTFPANSELVSDERAISYLSQTRPLSDTPWNFTLLTPLEDLRRQA--INQG 321

Query: 274 AMVGVLLLLLLMRL 287
            +V V   L+   L
Sbjct: 322 ILVAVAFALVAFLL 335