Pairwise Alignments

Query, 684 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 633 a.a., histidine kinase from Pseudomonas fluorescens FW300-N2E3

 Score =  167 bits (424), Expect = 1e-45
 Identities = 136/451 (30%), Positives = 217/451 (48%), Gaps = 75/451 (16%)

Query: 277 GVLLLLLLMRLRYEQYQKRLSEAKIQHVLFEAEERQRNMINKTHVGLLLIDGQGRIEEIN 336
           G ++ + ++++R E  ++R   A+++   F ++E          + +L  D   R++ + 
Sbjct: 185 GKIIGVAVVKVRLEAMEERWQRARLE--AFVSDENG--------IIILSSDPARRLKSVR 234

Query: 337 PMAKRYFSLSDSMVRQLQ------------AWSLFDTGNPNATVPLLLKNLTEHQELADI 384
           P++       + + R LQ            A      G    T P   + +++ QE++ +
Sbjct: 235 PLSD---DTKERLARSLQYYWYPLNELEPLARERLSEGVEKITFPANAELVSDEQEISYL 291

Query: 385 TNVETVA---------------RR---SDGSLFPVLFSLIA---VSWKDRRHYLVTLIDI 423
           +    ++               RR   + G L  V F+L+A   ++W +RR  + T    
Sbjct: 292 SQTRVLSDTPWNFTLLTPLGDLRREAINQGILVAVAFALVAFLLIAWNERRKVIAT---- 347

Query: 424 SKRKKAEIALQNANRDLQQRVEERTAALKS---------------------AQQELIEAS 462
             R  A  ALQ AN  L++R+ ERT  L++                     AQ EL++A 
Sbjct: 348 --RLAAREALQEANNQLERRITERTTDLRASNERLKSQIRERRQAEETLRRAQDELVQAG 405

Query: 463 KMAALGRMSSAITHELNQPLTGLRTLLSSNELLLERGETQLLKANTKLVHSLIDRMAAMT 522
           K+AA+G+MS++I HELNQPL  LRTL  +    LERG+  +  AN K ++ LIDRM  +T
Sbjct: 406 KLAAIGQMSTSIAHELNQPLAALRTLSGNTVRFLERGQLDIASANLKTINDLIDRMGRIT 465

Query: 523 SQLKSFAFNRPDALQAISLPDALQEILRIHQARLTPVDVRVRLSSDLPLVMGEEQRLRQV 582
           + L+SFA    D  QA SL  A+   L++  ARL    + +        V  ++ RL Q+
Sbjct: 466 ASLRSFARRGDDQGQA-SLGKAVDAALQLLGARLESARLLLHREFSDVQVQIDQTRLEQI 524

Query: 583 LGNLVSNALDAMSQTLEPKLSISAVSEEDQVIVRVSDNGCGIAPELLTTMFEPFQTSKKM 642
           L NL+ NALDAM     P+L +     + +  +RV DNG GI  E    +FEPF T+K  
Sbjct: 525 LVNLIGNALDAMQAQPLPELWLEGDIVDGKYRLRVRDNGHGINAEARKHLFEPFFTTKPG 584

Query: 643 GEGLGLGLAIVANSLRDMQGSIVATNNPDAG 673
            +GLGLGL + A SL    G  +   +P +G
Sbjct: 585 EQGLGLGLTLSA-SLAAATGGHLGVEHPASG 614



 Score = 68.2 bits (165), Expect = 1e-15
 Identities = 71/313 (22%), Positives = 134/313 (42%), Gaps = 43/313 (13%)

Query: 11  LVILLLIAVRWGSHAVSENWQLRQAQRHGEQRLLDYISDVRRTLSRFYHLPYLMTNEANT 70
           L+ILL++ + +    VSE++ +R    +G+++L  +   V   +S++ +LP L+  E++ 
Sbjct: 30  LIILLMVGLGYLGFWVSEHYGIRSLSENGQRQLELHARAVESEISKYTYLPSLLELESSV 89

Query: 71  LKLFQGDDRPQAQ--LQQQLAQLDKAANTKGWYILTLSGSLLTASKNAENWKLSDG---- 124
            +L  GD  P+ +  +   L  L++ + ++  Y++  +G +L  S    NW+  D     
Sbjct: 90  SELL-GDPTPEHRQAVNNYLEGLNRRSRSRAIYVMDTTGRVLATS----NWRDVDSYLGE 144

Query: 125 ----KAIIHKILQQREGISIVTKSVGSTPTYFVAAPVYLDVEIVGAVAVQVDLNVLADQW 180
               +A     ++ + G      S    P Y++A  +    +I+G   V+V L  + ++W
Sbjct: 145 DLSFRAYFQNAVRGQPGRFYGIGSTNGEPGYYLAHGLEEQGKIIGVAVVKVRLEAMEERW 204

Query: 181 -------FASDEL-ILFQNSQRHYFLSSSSVYSAD------------WIATHP------E 214
                  F SDE  I+  +S     L S    S D            W   +       E
Sbjct: 205 QRARLEAFVSDENGIIILSSDPARRLKSVRPLSDDTKERLARSLQYYWYPLNELEPLARE 264

Query: 215 VVAAAQKRSLFDGTRLTLWQVEQAPYLAQSVTLDDLNWTLTYLTPLKNLNATVNWISTSA 274
            ++   ++  F      +   ++  YL+Q+  L D  W  T LTPL +L      I+   
Sbjct: 265 RLSEGVEKITFPANAELVSDEQEISYLSQTRVLSDTPWNFTLLTPLGDLRREA--INQGI 322

Query: 275 MVGVLLLLLLMRL 287
           +V V   L+   L
Sbjct: 323 LVAVAFALVAFLL 335