Pairwise Alignments

Query, 684 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 853 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  121 bits (304), Expect = 1e-31
 Identities = 87/291 (29%), Positives = 147/291 (50%), Gaps = 26/291 (8%)

Query: 416 YLVTLIDISKRKKAEIALQNANRDLQQRVEERTAAL--------------KSAQQELIEA 461
           + V  +D+++R +AE AL+  N  L+ R++ERT AL              + AQ+ L +A
Sbjct: 416 FFVMALDVTERWRAEQALRELNETLESRIQERTQALAEVYERLLKEMASREQAQEALRQA 475

Query: 462 SKMAALGRMSSAITHELNQPLTGLRTLLSSNELLLERGETQLLKANTKLVHSLIDRMAAM 521
            KM A+G+++  I H+ N  LTG+   L   +  ++ G     +       +  +R AA+
Sbjct: 476 QKMEAVGQLTGGIAHDFNNMLTGIIGGLDLIQRYIQSGRHGETQRFIDAAVTSANRAAAL 535

Query: 522 TSQLKSFAFNRPDALQAISLPDALQEILRIHQARL-TPVDVRVRLSSDLPLVMGEEQRLR 580
           T +L +FA  +P  L+ + L   ++ +  +    L   + +  RL   L  V  +E +L 
Sbjct: 536 THRLLAFARRQPLNLKRVELNQLIESMHDLLSRTLGRHIHIDNRLQQGLWPVSSDENQLE 595

Query: 581 QVLGNLVSNALDAM----SQTLEPKL-------SISAVSEEDQVIVRVSDNGCGIAPELL 629
             L NLV NA DAM    S  LE +         +  ++    VI+R++D+GCG++ ++L
Sbjct: 596 SALLNLVINARDAMPDGGSLLLETRNVELYSQGEVGDLAAGRYVILRLTDSGCGMSAKVL 655

Query: 630 TTMFEPFQTSKKMGEGLGLGLAIVANSLRDMQGSIVATNNPDAGMSFEIRL 680
            ++FEPF T+K +G+G GLGL++V    R   G I   + P  G    + L
Sbjct: 656 ASVFEPFFTTKPIGQGTGLGLSMVYGFTRQAGGHIQIASEPGEGTQVSLYL 706