Pairwise Alignments

Query, 684 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 600 a.a., putative two-component sensor histidine kinase protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  156 bits (395), Expect = 2e-42
 Identities = 100/275 (36%), Positives = 154/275 (56%), Gaps = 12/275 (4%)

Query: 417 LVTLIDISKRKKAEIALQNANRDLQQRVEERTAALKSA-------QQELIEASKMAALGR 469
           L TL+   +R+ +   +Q +  +L+QRV+ERTA L++A       Q ELI+A+K+  +G 
Sbjct: 319 LFTLLQ-RERRHSLARMQQSRDELEQRVKERTAELEAANTQLKDTQDELIQAAKLTVVGT 377

Query: 470 MSSAITHELNQPLTGLRTLLSSNELLLERGETQLLKANTKLVHSLIDRMAAMTSQLKSFA 529
           MS++I HELNQPL  +R+   + +  LER      + N  ++  L DR+A +  Q KSF 
Sbjct: 378 MSASINHELNQPLAAIRSYTQNTQTFLERDMPGRARENLAIILELTDRLADIVGQFKSFT 437

Query: 530 FNRPDALQAISLPDALQEILRIHQARL--TPVDVRVRLSSDLPLVMGEEQRLRQVLGNLV 587
                    + L + LQ+ L I Q  L      + +    +   V  +  RL+QVL NL+
Sbjct: 438 RKSQGKDGVVMLANCLQQALTIVQPELDKQKAQLTIHCEDESLKVWCDGTRLQQVLVNLI 497

Query: 588 SNALDAMSQTLEPKLSISAVSEEDQVIVRVSDNGCGIAPELLTTMFEPFQTSKKMGEGLG 647
           +NAL+AMSQ+   +LSIS +   D V +R+ D+G G+   L+  +FEP+ T+ +  +GLG
Sbjct: 498 TNALNAMSQSPVKRLSISLLG-GDPVTIRIQDSGPGVRDSLMEKIFEPYYTTSER-QGLG 555

Query: 648 LGLAIVANSLRDMQGSIVATNNPDAGMSFEIRLRA 682
           LGL+I    +  MQG I   N P+ G  F+I L A
Sbjct: 556 LGLSISRRIIESMQGDIRVANAPEGGAIFDITLPA 590



 Score = 38.9 bits (89), Expect = 7e-07
 Identities = 76/340 (22%), Positives = 138/340 (40%), Gaps = 63/340 (18%)

Query: 16  LIAVRWGSHAVSENWQLRQAQRHGEQRLLDYISDVRRTLSRFYHLPYLMTNE---ANTLK 72
           ++ + W  H  S    L    R    +L + +S +   LSRF  +P++++     A+TL 
Sbjct: 24  VLYLTWSWHVRSGVSDLADTSR---AQLGELVSLLDGMLSRFETIPHVLSTNPMLADTL- 79

Query: 73  LFQGDDRPQAQLQQQLAQLDKAANTKGWYILTLSGSLLTASKNAENWKLSDG-------- 124
           L Q D     +L + L +L         Y++   G  + AS    NW+ S          
Sbjct: 80  LNQRDMDKVHRLNKYLEELRHITEASDIYLIDALGVAVAAS----NWQQSYSFVGQDYSF 135

Query: 125 KAIIHKILQQREGISIVTKSVGSTPTYFVAAPVYLDVEIVGAVAVQVDLNVLADQW---- 180
           +    + +  R+G      +      Y+ + PV     ++GA+ V++D+  +  Q     
Sbjct: 136 RPYFTEAIAGRQGNYYAVGTASDKRGYYFSFPVEDSGTVLGAIVVKLDVLDIETQASGVA 195

Query: 181 ----------------FASDE-------LILFQNSQRHYFLSSSSVYSADWIAT---HPE 214
                           FAS+        L  F +S+R Y L++S  Y+   I     HP 
Sbjct: 196 QAGQYDFIITDPDNIVFASNRAEWRLTSLGPFTDSKR-YALNASKRYAKRQITELDIHPA 254

Query: 215 VVAAAQKRSLFD-GTRLTLWQVEQAPYLAQSVTLDDLNWTLTYLTPLKNLNATVNWI--S 271
                +  + +  G+ L     + A YL  S  +    W +  LTPL  + ++++ +   
Sbjct: 255 YKGVTEGVNAYRIGSGL-----KAADYLDTSTAMIKAGWRVHVLTPLAPVYSSLSQVLLL 309

Query: 272 TSAMVGVLLLLLLMRLRYEQYQKRLSEAKIQHVLFEAEER 311
           ++   G+LLL  L+     Q ++R S A++Q    E E+R
Sbjct: 310 SATCYGLLLLFTLL-----QRERRHSLARMQQSRDELEQR 344