Pairwise Alignments

Query, 684 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 508 a.a., PAS domain S-box protein from Rhodopseudomonas palustris CGA009

 Score =  113 bits (283), Expect = 2e-29
 Identities = 105/384 (27%), Positives = 181/384 (47%), Gaps = 40/384 (10%)

Query: 313 RNMINKTHVGLLLIDGQGRIEEINPMAKRYFSLSDSMVRQLQAWSLFDTGNPNATVP--- 369
           R++++     ++LIDG+G +   +  A+R F +S+          L     P+AT     
Sbjct: 144 RSILDTVPDAMILIDGRGIMRFFSRAAERMFGMSEREAIGQNISVLMP--RPDATRHDNY 201

Query: 370 LLLKNLTEHQELADITNVETVARRSDGSLFPVLFSLIAVSWKDRRHYLVTLIDISKRKKA 429
           +   N T  + +  I  + T  RR DGS FP+  S+  +     R++   + D+++ ++ 
Sbjct: 202 IDRYNNTGERHIIGIGRIVT-GRRKDGSTFPIHLSIGEMESGGERYFTGFIRDLTEYQQT 260

Query: 430 EIALQNANRDLQQRVEERTAALKSAQQELIEASKMAALGRMSSAITHELNQPLTGLRTLL 489
           +                  A L   Q EL+  S++ A+G M+SA+ HELNQPL+ +   +
Sbjct: 261 Q------------------ARLHELQAELVHVSRLTAMGEMASALAHELNQPLSAISNYM 302

Query: 490 SSNELLLERGETQLLKANTKLVHSLIDRMA-------AMTSQLKSFAFNRPDALQAISLP 542
             +  LL  G T     NT  + S ++R A        +  +L+ F        +  SL 
Sbjct: 303 KGSRRLL-AGSTD---PNTVKIESAMERAAEQALRAGQIIRRLRDFVARGESEKRVESLA 358

Query: 543 DALQE--ILRIHQARLTPVDVRVRLSSDLPLVMGEEQRLRQVLGNLVSNALDAMSQTLEP 600
             ++E   L +  AR   V +R  L     LV+ +  +++QVL NL  NAL+AM+ + + 
Sbjct: 359 KLIEEAGALGLTGAREQGVVLRFNLDPAHDLVLVDRVQIQQVLVNLFRNALEAMANSDKK 418

Query: 601 KLSI-SAVSEEDQVIVRVSDNGCGIAPELLTTMFEPFQTSKKMGEGLGLGLAIVANSLRD 659
           +LS  +A   +D V V VSD G G+  ++   +F+ F T+K+   G+G+GL+I  + +  
Sbjct: 419 ELSAGNARVADDMVEVTVSDTGSGLPEQVKAKLFQTFFTTKE--TGMGVGLSISRSIIEA 476

Query: 660 MQGSIVATNNPDAGMSFEIRLRAA 683
             G + A  N   G +F   L  A
Sbjct: 477 HGGRMWAETNSAGGATFRFTLPLA 500