Pairwise Alignments

Query, 684 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1013 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  122 bits (307), Expect = 6e-32
 Identities = 115/427 (26%), Positives = 190/427 (44%), Gaps = 54/427 (12%)

Query: 293 QKRLSEAKIQHVLFEAEERQRNMINKTHVGLLLID-GQGRIEEINPMAKRYFSLSDSMVR 351
           ++R +EA     L E+E++ R + +     + + D   G I ++N  A R +  S   + 
Sbjct: 583 ERRATEA----ALAESEDKFRTIYDTIGDAIFVHDVASGSILDVNGGACRMYGYSRKELL 638

Query: 352 QLQAWSLFDTGNPNATVPLLLKNLTEHQELADITNVETVARRSDGSLFPVLFSLIAVSWK 411
            L    +  T +  A  P   ++     +     + E +AR S G  F VL +L      
Sbjct: 639 SLDVQGI--TADDPAFPPQAARDYMRRVQEEGPQSFEWMARGSSGRQFWVLVNLQIFRLS 696

Query: 412 DRRHYLVTLIDISKRKKAEIALQNANRD---LQQRVEERTAALKSAQQELIEASKMAALG 468
             +  L  + DI  RK+AE  LQ A  +   L QR+ E       AQ +L+++ KMA++G
Sbjct: 697 GGQRVLAVVRDIDGRKRAEQELQQALAEAKALNQRLAE-------AQSQLLQSEKMASIG 749

Query: 469 RMSSAITHELNQPL--------------------------------TGLRTLLSSNELLL 496
           ++++ + HE+N P+                                   R L S+ +L L
Sbjct: 750 QLAAGVAHEMNNPIGFVYSNLGTLDHYLREIFAIIAAYEAADSGPCRDCRQLESARQLKL 809

Query: 497 ERGETQLLKANTKLVHSL---IDRMAAMTSQLKSFAFNRPDALQAISLPDALQEILRIHQ 553
           E+    L     +L+      ++R+A +   LK F+       Q   L   L   L I  
Sbjct: 810 EKDFDFLRSDIVQLLAESRDGLERVAKIARDLKDFSRAGEAESQWADLHQGLDSTLNIVW 869

Query: 554 ARLTPVDVRVRLSSDLPLVMGEEQRLRQVLGNLVSNALDAMSQTLEPKLSISAVSEEDQV 613
             L       +   +LPLV  E  ++ QV  NL+ NA  A+ +  +  + +      D+V
Sbjct: 870 NELKYKCTVHKEYGELPLVWCEPSQINQVFMNLLVNAAQAIPK--KGDIWLRTGRRGDEV 927

Query: 614 IVRVSDNGCGIAPELLTTMFEPFQTSKKMGEGLGLGLAIVANSLRDMQGSIVATNNPDAG 673
            V VSD+GCGIAPE L  +FEPF T+K +G+G GLGL++  + ++  QG +   + P  G
Sbjct: 928 FVAVSDSGCGIAPEYLHRLFEPFFTTKPVGKGTGLGLSLAYSIVQKHQGRLEVESEPGRG 987

Query: 674 MSFEIRL 680
            +F + L
Sbjct: 988 STFTVWL 994