Pairwise Alignments

Query, 684 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1281 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  114 bits (284), Expect = 4e-29
 Identities = 119/410 (29%), Positives = 182/410 (44%), Gaps = 40/410 (9%)

Query: 288  RYEQYQKRLSEAKIQHVLFEAEERQRNMINKTHVGLLLIDGQGRIEEINPMAKRYFSLSD 347
            R EQ +   SE  ++  LFE           +  GL+L+   G + E NP        + 
Sbjct: 660  RKEQARAMASEVSMRRALFE----------HSRDGLVLLTEDGAVAEANPAMAAMLGYTP 709

Query: 348  SMVRQLQAWSLFDTGNPNATVPLLLKNLTEHQELADITNVETVARRSDGSLFPVLFSLIA 407
              + +L  W  +D   P   +  +L+ L++  E       +TV R  DG  F V  S   
Sbjct: 710  EEMERLHVWD-WDAAIPREQITAMLRALSKGGEF-----FQTVHRHKDGRTFNVEVSASR 763

Query: 408  VSWKDRRHYLVTLIDISKRKKAEIALQNANRDLQQRVEERTAALKSAQQELIEAS--KMA 465
            V W+ + + L    DI+ R + E  L+     L++ V  RT  L  A+ E   AS  K A
Sbjct: 764  VEWEGQAYVLCLHRDITFRLRLEQELEQHRHHLEELVHARTMELAEARDEAESASRAKSA 823

Query: 466  ALGRMSSAITHELNQPLTGLRTL--LSSNELLLERGETQLLK---ANTKLVHSLIDRMAA 520
             L  MS    HE+  P+  +  L  L   E+   R   ++ K   A T L++ + D +  
Sbjct: 824  FLANMS----HEIRTPMNAILGLSHLLGREVGDARARERVDKIHGAATHLLNIINDILDL 879

Query: 521  MTSQLKSFAFNRPDALQAISLPDALQEILRIHQARLTPVDVRVRLSSDLPLVM-GEEQRL 579
               + +    +  D L A  L D  + +LR  Q     + +   L   LP V+ G+   L
Sbjct: 880  SKIEAEKLHLDMQDFLLA-RLFDNAENLLR-PQLEAKGLRLERHLDPALPPVLRGDAMHL 937

Query: 580  RQVLGNLVSNALDAMSQ---TLEPKLSISAVSEEDQVIVRVSDNGCGIAPELLTTMFEPF 636
            +Q+L N +SNA+    Q   TL  +L +S    + ++ + V+D G GIAPE    +F+ F
Sbjct: 938  QQILVNFLSNAVKFSDQGHITLGARL-LSRSQSQVELRLEVADQGIGIAPEQQAALFQAF 996

Query: 637  Q-----TSKKMGEGLGLGLAIVANSLRDMQGSIVATNNPDAGMSFEIRLR 681
            +     T++K G G GLGLAI    +R M G I   + P  G  F I LR
Sbjct: 997  EQADNSTTRKYG-GTGLGLAISKRLIRLMGGDIGVDSKPGQGSVFWISLR 1045