Pairwise Alignments

Query, 684 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 555 a.a., hypothetical two-component sensor histidine kinase protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  108 bits (269), Expect = 9e-28
 Identities = 75/215 (34%), Positives = 114/215 (53%), Gaps = 10/215 (4%)

Query: 420 LIDISKRKKAEIALQNANRDLQQRVEERTA-------ALKSAQQELIEASKMAALGRMSS 472
           L+  S+R++    +Q A   L+QRVEERT         LK  Q ELI+A+K+  +G +S+
Sbjct: 325 LLFSSERRRNLQRMQLAQSLLEQRVEERTYDLQQANDRLKDTQDELIQAAKLTVIGSLSA 384

Query: 473 AITHELNQPLTGLRTLLSSNELLLERGETQLLKANTKLVHSLIDRMAAMTSQLKSFAFNR 532
           +I HELNQPL  LR+   + +  L R        N K++  L DR+A +  Q KSF    
Sbjct: 385 SINHELNQPLAALRSYAQNTQTFLARNMQDKALDNLKIIIELTDRLADIVGQFKSFTRKS 444

Query: 533 PDALQAISLPDALQEILRIHQARLTP--VDVRVRLSSDLPLVMGEEQRLRQVLGNLVSNA 590
                A  L   +++ L I Q  +    V++ V L      V G++ RL+QV  N++SNA
Sbjct: 445 QGTDSATDLKGCIKQALTIVQPEIDKQGVELDVLLPEGQYQVWGDKVRLQQVFVNIMSNA 504

Query: 591 LDAMSQTLEPKLSISAVSEEDQVIVRVSDNGCGIA 625
           + AM Q++  KLSI  V+ +D+  +R+    C  A
Sbjct: 505 IVAMQQSVIRKLSI-RVNCQDKFCIRIQALACAKA 538



 Score = 30.4 bits (67), Expect = 2e-04
 Identities = 57/320 (17%), Positives = 111/320 (34%), Gaps = 51/320 (15%)

Query: 36  QRHGEQRLLDYISDVRRTLSRFYHLPYLMTNEANTLKLFQGDDRPQ--AQLQQQLAQLDK 93
           Q+  E++L + +S +   LSR+  +P++++       +      PQ   +L   L ++  
Sbjct: 42  QQQSEKQLKELVSFLDGALSRYESIPHVLSTNPMLANVLNDQQNPQKVQELNLYLEEIQH 101

Query: 94  AANTKGWYILTLSGSLLTASKNAENW--------KLSDGKAIIHKILQQREGISIVTKSV 145
                  Y++   G  + AS    NW        K    +      +    G      + 
Sbjct: 102 VTEASDIYLIDALGIAIAAS----NWQQPFSFIGKDYSFRPYYTDAISGNLGRYYAVGTS 157

Query: 146 GSTPTYFVAAPVYLD--VEIVGAVAVQVDLNVLADQ----WFASDELILFQNSQRHYFLS 199
                ++ + P+Y      I+GA+ V+VD+  +  Q      A     L  +     F+S
Sbjct: 158 SDKRGFYFSYPIYQQGGKGILGAIIVKVDIADIEQQSTSIAMAGQYQFLISDPDDIVFIS 217

Query: 200 SSSVYSADWIATHPEVVAAAQKRSLFDGTRLTLWQV------------------------ 235
           S      +W  T    +  A++ +L    R     +                        
Sbjct: 218 SVD----EWRLTSLTPLTQAKQYALNASKRYAERPIGELIIKPQYQDDSTSSGHIYHIRE 273

Query: 236 --EQAPYLAQSVTLDDLNWTLTYLTPLKNLNATVNWISTSAMVGVLLLLLLMRLRYEQYQ 293
              QA Y+     +    W +  L PLK L+ ++  +   +   + LLL L  L   + +
Sbjct: 274 GNSQAQYMDTHHLMTKAGWRVHILAPLKPLHESMPALMLLS-ASIYLLLALGLLFSSERR 332

Query: 294 KRLSEAKIQHVLFEAEERQR 313
           + L   ++   L E    +R
Sbjct: 333 RNLQRMQLAQSLLEQRVEER 352