Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 308 a.a., Inositol transport system sugar-binding protein from Pseudomonas fluorescens FW300-N2E2

 Score =  140 bits (352), Expect = 5e-38
 Identities = 88/297 (29%), Positives = 157/297 (52%), Gaps = 9/297 (3%)

Query: 3   MKKLTTLISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLIVL 62
           M++ T L +  LL  S    A A   + + ++ +++ F   +++G    AK+    +   
Sbjct: 1   MRRCTLLFATLLLLFSQW--AAADYRIGVSIARVDDNFMTYVRNGLAEAAKKENVQIQFE 58

Query: 63  DSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRGEV 122
           D+Q D  ++L+ V+    + V A+++ P D+ A +N  R A  +K P++ ++R      +
Sbjct: 59  DAQGDVVRQLNQVQGFINQKVDAVIVLPVDTSATANITRAAVEAKTPLVYVNRHPDERTL 118

Query: 123 ---VSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAVKGSK- 178
              V  +AS+++  G +   ++  K+G    +  + G    +A  +R EG    +K    
Sbjct: 119 PKGVVTVASNDIEAGHLQMRYLAEKLGGKGNLAIIMGDLAQNATHDRTEGVKQVLKDYPG 178

Query: 179 MQLLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASGKS---VMI 235
           ++++  Q A++ R KG+++  N L A     A+ A NDEMA+GA  A+Q +GK+   V I
Sbjct: 179 IKIVEQQSAEWQRNKGMDLTSNWLLAGSRFDAIVANNDEMAIGAAMALQQAGKTKGEVAI 238

Query: 236 VGFDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVEAYIPVALKVI 292
           VG DG  DG+AA++RG L A+V Q P       ++ A KM+KGE VE  + V  ++I
Sbjct: 239 VGIDGLPDGLAAIKRGMLVASVFQDPKAQATSAVQAALKMIKGEPVETDVWVPFQLI 295