Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 307 a.a., Inositol transport system sugar-binding protein from Pseudomonas fluorescens FW300-N2E2

 Score =  135 bits (340), Expect = 1e-36
 Identities = 85/300 (28%), Positives = 157/300 (52%), Gaps = 13/300 (4%)

Query: 4   KKLTTLISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKEL-GYNLIVL 62
           K+L T +  AL +     +A A   + + ++ +++ F   M+D   A AK+L G NL   
Sbjct: 3   KRLLTYLFVALFAP----LALADIRIGVSIAQVDDVFLAQMRDYMAAHAKDLPGVNLQFE 58

Query: 63  DSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRGEV 122
           D+Q D  ++L+ V++ T +G+ AI++NP D+ A       A ++ +P++ ++R   + E+
Sbjct: 59  DAQGDVVRQLNQVQNFTAQGMDAIIVNPVDTAATQKMTAHAQKASVPLVYVNRRPDQAEL 118

Query: 123 ---VSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAVKG-SK 178
              V ++ SD +  GEM   ++  K+G    +  + G+   +A   R +G    +K    
Sbjct: 119 PPGVGYVGSDEIKAGEMQMRYLAEKMGGKGNLAIMLGLLSNNATHNRTQGVKEVLKSYPD 178

Query: 179 MQLLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAI----QASGKSVM 234
           + ++  Q A++ R+K +++M N + +   + AV A  DEMA+GA  AI      SGK ++
Sbjct: 179 IHVVEEQSAEWQRSKAMDLMNNWILSGKKIDAVAANADEMAIGAAMAINQAGMRSGKDIL 238

Query: 235 IVGFDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVEAYIPVALKVIAK 294
           + G DG   G+ A+++ QL  TV Q         I+ A KM++ E   A + +  ++I K
Sbjct: 239 VGGSDGGPAGLDAIKKDQLLVTVYQDNKGQAIGSIDLALKMIRKEPFAAELTIPYQLITK 298