Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  144 bits (362), Expect = 3e-39
 Identities = 88/282 (31%), Positives = 156/282 (55%), Gaps = 9/282 (3%)

Query: 6   LTTLISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLIVLDSQ 65
           L + + AA L+  +S    A + + I   TL+ P+F+ M + A  +AK L   L+V D+Q
Sbjct: 9   LCSAVLAAGLTFQLSPAFAAGEKILINFQTLSIPYFIYMHEQASQEAKVLNVELLVQDAQ 68

Query: 66  NDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRGEV-VS 124
           +  +K+ S+VE+   +GV A+++ P D  A++ A+      K+P++T+DR     +  V 
Sbjct: 69  SSSTKQSSDVENALTQGVDAMVVAPNDVTALAPALNEVLSEKVPLVTVDRRVEGTDTPVP 128

Query: 125 HIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAVK--GSKMQLL 182
           ++ +D+V GG +    + + + + A+V  + G  G+S A +R +G    +K  G K QL+
Sbjct: 129 YVTADSVAGGRLMAELVTSNMKNGARVAFIGGTPGSSTAIDRAKGVHEGLKAGGGKFQLV 188

Query: 183 ASQPADFDRTKGLNVMENL---LAANPDVQAVFAQNDEMALGALRAIQASG--KSVMIVG 237
           A Q  +++R K ++V EN+   L+ANP   A+   + +MALGA  A++A+G    V ++G
Sbjct: 189 AEQSGEWERAKAMSVAENILTSLSANPP-DAIICASGDMALGAAEAVRATGLKGKVKVIG 247

Query: 238 FDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGE 279
           FD   + + A+  G +A  V Q P       +  A K ++GE
Sbjct: 248 FDAYPEVLRAIRDGDIAGIVEQSPSKQIRTALRMAVKKVRGE 289