Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., LacI family transcriptional regulator from Pseudomonas fluorescens FW300-N2E3

 Score =  141 bits (355), Expect = 2e-38
 Identities = 91/285 (31%), Positives = 162/285 (56%), Gaps = 12/285 (4%)

Query: 11  SAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKE--LGYNLIV--LDSQN 66
           ++A L  S +F    +  VA+V+ +L N FF+TM+DGA+A  KE    ++LI   +  + 
Sbjct: 18  ASAALPLSSAFADTEKPKVALVMKSLANEFFLTMEDGAKAYQKEHSADFDLISNGIKDET 77

Query: 67  DPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGA------SRG 120
           D + +   VE + +  V A++I P DS A+   I+ A  + I V+ +D         S+ 
Sbjct: 78  DTAGQTRIVEQMILAKVNALVIAPADSKAMVPVIKKAIDAGITVINIDNQLDPAVVKSKN 137

Query: 121 EVVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAVKGSKMQ 180
             V  +  DN  G  + G ++  ++ +  +V  +EG++ T+ A+ R  GF +A++ ++++
Sbjct: 138 MTVPFVGPDNRKGARLVGEYLAKQLKAGDEVGIIEGVSTTTNAQARTAGFKDAMEAAQIK 197

Query: 181 LLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASGKS--VMIVGF 238
           +++ Q  D++  KG  V  ++L+  P  +A+ A ND MA+GA+ A++A+GK+  V +VG+
Sbjct: 198 VVSLQSGDWEIDKGNKVAASILSEYPQTKALLAGNDSMAVGAVSAVRAAGKAGKVQVVGY 257

Query: 239 DGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVEA 283
           D  +     ++ G++ AT  Q        GIETA KMLKGEKV++
Sbjct: 258 DNINAIKPMLKDGRVLATADQFAAKQAVFGIETALKMLKGEKVDS 302