Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 311 a.a., monosaccharide ABC transporter substrate-binding protein, CUT2 family from Pseudomonas syringae pv. syringae B728a

 Score =  115 bits (289), Expect = 1e-30
 Identities = 83/291 (28%), Positives = 146/291 (50%), Gaps = 11/291 (3%)

Query: 3   MKKLTTLISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKELG----YN 58
           MK    L S A+     S  A A   + + +S  ++ +   ++D   AKAK +      +
Sbjct: 1   MKTKIALTSLAMALMLGSGAALADIKIGVSMSQFDDTWLTYLRDDMSAKAKVMSTTEKVD 60

Query: 59  LIVLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGAS 118
           L  +D++ D +K+L  V+DL  + V A+++NP D+ A +   + A  + IP++ ++R   
Sbjct: 61  LQFVDARADVNKQLDQVKDLINKKVDALIVNPVDTAATARITKEAVAAGIPLVYVNRRPD 120

Query: 119 RGEV---VSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAV- 174
              +   V+ + SD+V  G +   +I  K+     V+ L G    ++ + R +G    + 
Sbjct: 121 DLNLPAGVATVTSDDVEAGRLQAQYIADKMKDKGDVMILLGDLANNSTQNRTKGVKEVLD 180

Query: 175 KGSKMQLLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASGK--- 231
           K   +++   Q   + R KG+++  + L       AV A NDEMA+GA  A++ +G    
Sbjct: 181 KYPDIKIEEEQTGTYLRQKGMDLTNDWLTQGRKFNAVLANNDEMAIGAAMALKQAGVEKG 240

Query: 232 SVMIVGFDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVE 282
           S++I G DGT DG+ AV +G LA +V Q         I+ A K+ + EK+E
Sbjct: 241 SILIAGVDGTPDGLNAVTKGDLAVSVYQDAKGQADGAIDAAVKLARKEKIE 291